Evidence map›Paper›PMID 26639551›Full record

ArticleScientific reports2015

The orphan response regulator EpsW is a substrate of the DifE kinase and it regulates exopolysaccharide in Myxococcus xanthus.

Wesley P Black, Lingling Wang, Manli Y Davis, Zhaomin Yang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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  7. AApplied and environmental microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Wesley P BlackDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
Lingling WangDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
Manli Y DavisDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
Zhaomin YangDepartment of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
Virginia Tech · US

Funding

Regulation and Mechanism of M. xanthus Social GlidingR01GM071601 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI YANG, ZHAOMIN · 2004 to 2009
$1.3M
NIGMS NIH HHS GM071601NIGMS NIH HHS R01 GM071601
6 · The paper itself

Abstract

Here we attempted to identify the downstream target of the DifE histidine kinase in the regulation of exopolysaccharide (EPS) production in the Gram-negative bacterium Myxococcus xanthus. This bacterium is an important model system for the studies of Type IV pilus (T4P) because it is motile by social (S) motility which is powered by T4P retraction. EPS is critical for S motility because it is the preferred anchor for T4P retraction in this bacterium. Previous studies identified the Dif chemosensory pathway as crucial for the regulation of EPS production. However, the downstream target of the DifE kinase in this pathway was unknown. In this study, EpsW, an orphan and single-domain response regulator (RR), was identified as a potential DifE target first by bioinformatics. Subsequent experiments demonstrated that epsW is essential for EPS biosynthesis in vivo and that EpsW is directly phosphorylated by DifE in vitro. Targted mutagenesis of epsW suggests that EpsW is unlikely the terminal RR of the Dif pathway. We propose instead that EpsW is an intermediary in a multistep phosphorelay that regulates EPS in M. xanthus.

Indexed as

Amino Acid SequenceBacterial ProteinsComputational BiologyMolecular Sequence DataMutationMyxococcus xanthusPhosphorylationPolysaccharides, BacterialSequence AlignmentSubstrate SpecificityBacterial ProteinsDifE protein, Myxococcus xanthusPolysaccharides, Bacterial

Identifiers

PMID26639551
PMCPMC4671073
OpenAlexW2191720091

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.