Evidence map›Paper›PMID 26638077›Full record

ArticleCell2015

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish.

Kathrin Reichwald, Andreas Petzold, Philipp Koch, Bryan R Downie, Nils Hartmann, Stefan Pietsch, Mario Baumgart, Domitille Chalopin, Marius Felder, Martin Bens and 21 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 162 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed, 1 pooled it
18.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 1 synthesis or guideline pooled it, 348 citations in OpenAlex.

  1. Sex-specific differences in zebrafish brains.Biology of sex differences · 2022
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Killiverse: an interactive multi-omics web resource for killifish.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Molecular evolution of animal aging.The EMBO journal · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Life-long behavioral screen reveals an architecture of vertebrate aging.bioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 9 institutions in 3 countries.

Kathrin ReichwaldLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Andreas PetzoldLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Philipp KochLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Bryan R DownieLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Nils HartmannLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Stefan PietschLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Mario BaumgartLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Domitille ChalopinInstitut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, 69364 Lyon Cedex, France.
Marius FelderLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Martin BensLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Arne SahmLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Karol SzafranskiLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Stefan TaudienLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Marco GrothLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Ivan ArisiGenomics Facility, European Brain Research Institute (EBRI) Rita Levi-Montalcini, Rome 00143, Italy.
Anja WeiseJena University Hospital, Institute of Human Genetics, Friedrich Schiller University, Jena 07743, Germany.
Samarth S BhattJena University Hospital, Institute of Human Genetics, Friedrich Schiller University, Jena 07743, Germany.
Virag SharmaMax Planck Institute of Molecular Cell Biology and Genetics, Dresden 01307, Germany; Max Planck Institute for the Physics of Complex Systems, Dresden 01307, Germany.
Johann M KrausMedical Systems Biology, Ulm University, Ulm 89069, Germany.
Florian SchmidMedical Systems Biology, Ulm University, Ulm 89069, Germany; International Graduate School in Molecular Medicine at Ulm University (GSC270), Ulm 89069, Germany.
Steffen PriebeLeibniz Institute for Natural Product Research and Infection Biology-Hans-Knoell-Institute (HKI), Jena 07745, Germany.
Thomas LiehrJena University Hospital, Institute of Human Genetics, Friedrich Schiller University, Jena 07743, Germany.
Matthias GörlachLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Manuel E ThanLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany.
Michael HillerMax Planck Institute of Molecular Cell Biology and Genetics, Dresden 01307, Germany; Max Planck Institute for the Physics of Complex Systems, Dresden 01307, Germany.
Hans A KestlerLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany; Medical Systems Biology, Ulm University, Ulm 89069, Germany; Faculty of Biology and Pharmacy, Friedrich Schiller University Jena, Jena 07743, Germany.
Jean-Nicolas VolffInstitut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, 69364 Lyon Cedex, France.
Manfred SchartlDepartment of Physiological Chemistry, Biocenter, University of Wuerzburg, Wuerzburg 97074, Germany; Comprehensive Cancer Center Mainfranken, University Hospital Wuerzburg, Wuerzburg 97074, Germany.
Alessandro CellerinoLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany; Laboratory of Biology, Scuola Normale Superiore, Pisa 56126, Italy.
Christoph EnglertLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany; Faculty of Biology and Pharmacy, Friedrich Schiller University Jena, Jena 07743, Germany.
Matthias PlatzerLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena 07745, Germany. Electronic address: matthias.platzer@leibniz-fli.de.
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEFriedrich Schiller University Jena · DEMax Planck Institute for the Physics of Complex Systems · DEUniversität Ulm · DECentre National de la Recherche Scientifique · FRComprehensive Cancer Center Mainfranken · DEÉcole Normale Supérieure de Lyon · FREuropean Brain Research Institute · ITLeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The killifish Nothobranchius furzeri is the shortest-lived vertebrate that can be bred in the laboratory. Its rapid growth, early sexual maturation, fast aging, and arrested embryonic development (diapause) make it an attractive model organism in biomedical research. Here, we report a draft sequence of its genome that allowed us to uncover an intra-species Y chromosome polymorphism representing-in real time-different stages of sex chromosome formation that display features of early mammalian XY evolution "in action." Our data suggest that gdf6Y, encoding a TGF-β family growth factor, is the master sex-determining gene in N. furzeri. Moreover, we observed genomic clustering of aging-related genes, identified genes under positive selection, and revealed significant similarities of gene expression profiles between diapause and aging, particularly for genes controlling cell cycle and translation. The annotated genome sequence is provided as an online resource (http://www.nothobranchius.info/NFINgb).

Indexed as

Biological EvolutionSex ChromosomesAgingAnimalsFemaleGenomeKillifishesMaleMolecular Sequence DataSex Determination Processes

Identifiers

PMID26638077
OpenAlexW2183090108

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.