Evidence map›Paper›PMID 26637296›Full record

ArticleBMC cell biology2015

Dissecting seipin function: the localized accumulation of phosphatidic acid at ER/LD junctions in the absence of seipin is suppressed by Sei1p(ΔNterm) only in combination with Ldb16p.

Sungwon Han, Derk D Binns, Yu-Fang Chang, Joel M Goodman

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Targeting Seipin to Alleviate Hepatic Steatosis in Zebrafish (Danio Rerio).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Seipin-still a mysterious protein?Frontiers in cell and developmental biology · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Spatial compartmentalization of lipid droplet biogenesis.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sungwon HanDepartment of Pharmacology, University of Texas Southwestern Medical School, Dallas, TX, 75390-9041, USA.
Derk D BinnsDepartment of Pharmacology, University of Texas Southwestern Medical School, Dallas, TX, 75390-9041, USA.
Yu-Fang ChangDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853-2703, USA.
Joel M GoodmanDepartment of Pharmacology, University of Texas Southwestern Medical School, Dallas, TX, 75390-9041, USA. Joel.Goodman@UTSouthwestern.edu.
The University of Texas Southwestern Medical Center · USCornell University · US

Funding

GENETICS AND DEVELOPMENT OF YEAST MEMBRANE MUTANTSR01GM019629 · NIGMS · YESHIVA UNIVERSITY · PI HENRY, SUSAN ARMSTRONG · 1985 to 2015
$6.0M
A Simple Cellular Model for LipodystrophyR01GM084210 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GOODMAN, JOEL M · 2008 to 2021
$4.0M
GENETIC REGULATION OF PHOSPHOLIPID SYNTHESIS IN YEASTR37GM019629 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HENRY, SUSAN A. · 1991 to 2000
$426k
STRUCTURE/FUNCTION ANALYSIS OF PHA4 IN C ELEGANSF32GM019629 · NIGMS · UNIVERSITY OF UTAH · PI KALTENBACH, LINDA S · 1999 to 2001
$59k
NIGMS NIH HHS F32 GM019629NIGMS NIH HHS GM084210NIGMS NIH HHS GM19629NIGMS NIH HHS R01 GM019629NIGMS NIH HHS R01 GM084210NIGMS NIH HHS R37 GM019629
6 · The paper itself

Abstract

backgroundSeipin is required for the correct assembly of cytoplasmic lipid droplets. In the absence of the yeast seipin homolog Sei1p (formerly Fld1p), droplets are slow to bud from the endoplasmic reticulum, lack the normal component of proteins on their surface, are highly heterogeneous in size and shape, often bud into the nucleus, and promote local proliferation of the endoplasmic reticulum in which they become tangled. But the mechanism by which seipin catalyzes lipid droplet formation is still uncertain.

resultsSeipin prevents a localized accumulation of phosphatidic acid (PA puncta) at ER-droplet junctions. PA puncta were detected with three different probes: Opi1p, Spo20p(51-91) and Pah1p. A system of droplet induction was used to show that PA puncta were not present until droplets were formed; the puncta appeared regardless of whether droplets consisted of triacylglycerol or steryl ester. Deletion strains were used to demonstrate that a single phosphatidic acid-producing enzyme is not responsible for the generation of the puncta, and the puncta remain resistant to overexpression of enzymes that metabolize phosphatidic acid, suggesting that this lipid is trapped in a latent compartment. Suppression of PA puncta requires the first 14 amino acids of Sei1p (Nterm), a domain that is also important for initiation of droplet assembly. Consistent with recent evidence that Ldb16p and Sei1p form a functional unit, the PA puncta phenotype in the ldb16Δ sei1Δ strain was rescued by human seipin. Moreover, PA puncta in the sei1Δ strain expressing Sei1p(ΔNterm) was suppressed by overexpression of Ldb16p, suggesting a functional interaction of Nterm with this protein. Overexpression of both Sei1p and Ldb16p, but not Sei1p alone, is sufficient to cause a large increase in droplet number. However, Ldb16p alone increases triacylglycerol accumulation in the ldb16Δ sei1Δ background.

conclusionWe hypothesize that seipin prevents formation of membranes with extreme curvature at endoplasmic reticulum/droplet junctions that would attract phosphatidic acid. While Ldb16p alone can affect triacylglycerol accumulation, proper droplet formation requires the collaboration of Sei1p and Ldb16.

Indexed as

Biological TransportEndoplasmic ReticulumGTP-Binding Protein gamma SubunitsHumansLipid DropletsMembrane ProteinsMitochondrial ProteinsPhosphatidic AcidsProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTriglyceridesBSCL2 protein, humanFld1 protein, S cerevisiaeGTP-Binding Protein gamma SubunitsLDB16 protein, S cerevisiaeMembrane ProteinsMitochondrial ProteinsPhosphatidic AcidsSaccharomyces cerevisiae ProteinsTriglycerides

Identifiers

PMID26637296
PMCPMC4670494
OpenAlexW2183967063

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.