Evidence map›Paper›PMID 26637280›Full record

ArticleGenes & development2015

The large N-terminal region of the Brr2 RNA helicase guides productive spliceosome activation.

Eva Absmeier, Jan Wollenhaupt, Sina Mozaffari-Jovin, Christian Becke, Chung-Tien Lee, Marco Preussner, Florian Heyd, Henning Urlaub, Reinhard Lührmann, Karine F Santos and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

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  12. Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2.Acta crystallographica. Section D, Structural biology · 2023
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  17. Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Eva AbsmeierLaboratory of Structural Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany;
Jan WollenhauptLaboratory of Structural Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany;
Sina Mozaffari-JovinDepartment of Cellular Biochemistry, Max Planck Institute for Biophysical Chemistry, D-37077 Göttingen, Germany;
Christian BeckeLaboratory of Structural Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany;
Chung-Tien LeeResearch Group Bioanalytical Mass Spectrometry, Max Planck Institute for Biophysical Chemistry, D-37077 Göttingen, Germany; Bioanalytics Group, Institute for Clinical Chemistry, University Medical Center Göttingen, Georg-August-Universität, D-37099 Göttingen, Germany;
Marco PreussnerLaboratory of RNA Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany.
Florian HeydLaboratory of RNA Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany.
Henning UrlaubResearch Group Bioanalytical Mass Spectrometry, Max Planck Institute for Biophysical Chemistry, D-37077 Göttingen, Germany; Bioanalytics Group, Institute for Clinical Chemistry, University Medical Center Göttingen, Georg-August-Universität, D-37099 Göttingen, Germany;
Reinhard LührmannDepartment of Cellular Biochemistry, Max Planck Institute for Biophysical Chemistry, D-37077 Göttingen, Germany;
Karine F SantosLaboratory of Structural Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany;
Markus C WahlLaboratory of Structural Biochemistry, Freie Universität Berlin, D-14195 Berlin, Germany;
Freie Universität Berlin · DEMax Planck Institute for Biophysical Chemistry · DEUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Brr2 helicase provides the key remodeling activity for spliceosome catalytic activation, during which it disrupts the U4/U6 di-snRNP (small nuclear RNA protein), and its activity has to be tightly regulated. Brr2 exhibits an unusual architecture, including an ∼ 500-residue N-terminal region, whose functions and molecular mechanisms are presently unknown, followed by a tandem array of structurally similar helicase units (cassettes), only the first of which is catalytically active. Here, we show by crystal structure analysis of full-length Brr2 in complex with a regulatory Jab1/MPN domain of the Prp8 protein and by cross-linking/mass spectrometry of isolated Brr2 that the Brr2 N-terminal region encompasses two folded domains and adjacent linear elements that clamp and interconnect the helicase cassettes. Stepwise N-terminal truncations led to yeast growth and splicing defects, reduced Brr2 association with U4/U6•U5 tri-snRNPs, and increased ATP-dependent disruption of the tri-snRNP, yielding U4/U6 di-snRNP and U5 snRNP. Trends in the RNA-binding, ATPase, and helicase activities of the Brr2 truncation variants are fully rationalized by the crystal structure, demonstrating that the N-terminal region autoinhibits Brr2 via substrate competition and conformational clamping. Our results reveal molecular mechanisms that prevent premature and unproductive tri-snRNP disruption and suggest novel principles of Brr2-dependent splicing regulation.

Indexed as

Models, MolecularAdenosine TriphosphatasesChaetomiumCrystallizationHumansProtein BindingProtein FoldingProtein SplicingProtein Structure, QuaternaryProtein Structure, TertiaryRibonucleoproteins, Small NuclearRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA-Binding ProteinsRNA HelicasesSaccharomyces cerevisiaeAdenosine TriphosphatasesBRR2 protein, S cerevisiaePRP8 protein, S cerevisiaePRPF8 protein, humanRibonucleoproteins, Small NuclearRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA-Binding ProteinsRNA HelicasesSaccharomyces cerevisiae ProteinsSNRNP200 protein, humanpre-mRNA splicingremodeling of RNA–protein complexesRNA helicase structure and functionspliceosome catalytic activationX-ray crystallography

Identifiers

PMID26637280
PMCPMC4699386
OpenAlexW2185816073

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LicenceCC BY-NC
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.