Evidence map›Paper›PMID 26636953›Full record

ArticleBiophysical journal2015

A Transport Model for Estimating the Time Course of ERK Activation in the C. elegans Germline.

Henry H Mattingly, Jessica J Chen, Swathi Arur, Stanislav Y Shvartsman

Abstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Spatial and Temporal Analysis of Active ERK in the C. elegans Germline.Journal of visualized experiments : JoVE · 2016
    Article
  5. Review
  6. Long-term dynamics of multisite phosphorylation.Molecular biology of the cell · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Henry H MattinglyDepartment of Chemical and Biological Engineering and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey.
Jessica J ChenThe University of Texas Graduate School of Biomedical Sciences and Department of Genetics, University of Texas M. D. Anderson Cancer Center, Houston, Texas.
Swathi ArurThe University of Texas Graduate School of Biomedical Sciences and Department of Genetics, University of Texas M. D. Anderson Cancer Center, Houston, Texas. Electronic address: sarur@mdanderson.org.
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey. Electronic address: stas@princeton.edu.

Funding

Erk-mediated regulation of Dicer and Drosha function in C. elegansR01GM098200 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ARUR, SWATHI · 2011 to 2020
$3.3M
Systems biology of MAPK signaling in early drosophila embryoR01GM086537 · NIGMS · PRINCETON UNIVERSITY · PI BURDINE, REBECCA D., GOLDSMITH, ELIZABETH J. · 2011 to 2018
$3.1M
NIGMS NIH HHS GM 98200NIGMS NIH HHS R01 GM086537NIGMS NIH HHS R01GM086537NIGMS NIH HHS R01 GM098200
6 · The paper itself

Abstract

The Caenorhabditis elegans germline is a well-studied model system for investigating the control of cell fate by signaling pathways. Cell signals at the distal tip of the germline promote cell proliferation; just before the loop, signals couple cell maturation to organism-level nutrient status; at the proximal end of the germline, signals coordinate oocyte maturation and fertilization in the presence of sperm. The latter two events require dual phosphorylation and activation of ERK, the effector molecule of the Ras/MAPK cascade. In C. elegans, ERK is known as MPK-1. At this point, none of today's methods for real-time monitoring of dually phosphorylated MPK-1 are working in the germline. Consequently, quantitative understanding of the MPK-1-dependent processes during germline development is limited. Here, we make a step toward advancing this understanding using a model-based framework that reconstructs the time course of MPK-1 activation from a snapshot of a fixed germline. Our approach builds on a number of recent studies for estimating temporal dynamics from fixed organisms, but takes advantage of the anatomy of the germline to simplify the analysis. Our model predicts that the MPK-1 signal turns on ∼30 h into germ cell progression and peaks ∼7 h later.

Indexed as

Models, BiologicalAnimalsCaenorhabditis elegansEnzyme ActivationExtracellular Signal-Regulated MAP KinasesGerm CellsKineticsMAP Kinase Signaling SystemProtein TransportExtracellular Signal-Regulated MAP Kinases

Identifiers

PMID26636953
PMCPMC4675862

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.