Evidence map›Paper›PMID 26635786›Full record

ArticleFrontiers in microbiology2015

Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.

Chiara Ferrario, Sabrina Duranti, Christian Milani, Leonardo Mancabelli, Gabriele A Lugli, Francesca Turroni, Marta Mangifesta, Alice Viappiani, Maria C Ossiprandi, Douwe van Sinderen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Chiara FerrarioLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Sabrina DurantiLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Christian MilaniLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Leonardo MancabelliLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Gabriele A LugliLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Francesca TurroniLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
Marta MangifestaGenProbio Ltd. Parma, Italy.
Alice ViappianiGenProbio Ltd. Parma, Italy.
Maria C OssiprandiDepartment of Medical-Veterinary Science, University of Parma Parma, Italy.
Douwe van SinderenAPC Microbiome Institute and School of Microbiology, University College Cork, National University of Ireland Cork, Ireland.
Marco VenturaLaboratory of Probiogenomics, Department of Life Sciences, University of Parma Parma, Italy.
University of Parma · ITAPC Microbiome Institute · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The acquisition and assimilation strategies followed by members of the infant gut microbiota to retrieve nitrogen from the gut lumen are still largely unknown. In particular, no information on these metabolic processes is available regarding bifidobacteria, which are among the first microbial colonizers of the human intestine. Here, evaluation of amino acid auxotrophy and prototrophy of Bifidobacterium bifidum, with particular emphasis on B. bifidum strain PRL2010 (LMG S-28692), revealed a putative auxotrophy for cysteine. In addition, we hypothesized that cysteine plays a role in the oxidative stress response in B. bifidum. The use of glutathione as an alternative reduced sulfur compound did not alleviate cysteine auxotrophy of this strain, though it was shown to stimulate expression of the genes involved in cysteine biosynthesis, reminiscent of oxidative stress response. When PRL2010 was grown on a medium containing complex substrates, such as whey proteins or casein hydrolysate, we noticed a distinct growth-promoting effect of these compounds. Transcriptional analysis involving B. bifidum PRL2010 cultivated on whey proteins or casein hydrolysate revealed that the biosynthetic pathways for cysteine and methionine are modulated by the presence of casein hydrolysate. Such findings support the notion that certain complex substrates may act as potential prebiotics for bifidobacteria in their ecological niche.

Indexed as

bifidobacteriachemically defined mediumgenomicsmicrobiota

Identifiers

PMID26635786
PMCPMC4656816
OpenAlexW2229342576

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.