Evidence map›Paper›PMID 26634245›Full record

Trial reportBMC genetics2015

A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.

Sharon M Lutz, Michael H Cho, Kendra Young, Craig P Hersh, Peter J Castaldi, Merry-Lynn McDonald, Elizabeth Regan, Manuel Mattheisen, Dawn L DeMeo, Margaret Parker and 16 more

Open access · diamondAbstract readClinical Trial
In one paragraph

Trial report in BMC genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 6 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 6 syntheses or guidelines pooled it, 160 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Genome-Wide Association Analysis of Single-Breath DlAmerican journal of respiratory cell and molecular biology · 2019
    Trial
  8. Article
  9. Observational
  10. Review
  11. Article
  12. Article
  13. Genomic analysis of Canadian children with food allergies points to the immunoglobulin heavy chain gene locus.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 11 institutions in 3 countries.

Sharon M LutzDepartment of Biostatistics, University of Colorado Anschutz Medical Campus, 13001 E. 17th Place, B119 Bldg. 500, W3128, Aurora, CO, 80045, USA. sharon.lutz@ucdenver.edu.
Michael H ChoChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. remhc@channing.harvard.edu.
Kendra YoungDepartment of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. kendra.young@ucdenver.edu.
Craig P HershChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. craig.hersh@channing.harvard.edu.
Peter J CastaldiChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. repjc@channing.harvard.edu.
Merry-Lynn McDonaldChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. remrm@channing.harvard.edu.
Elizabeth ReganDepartment of Medicine, National Jewish Health, Denver, CO, USA. regane@njhealth.org.
Manuel MattheisenChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. mm@hum-gen.au.dk.
Dawn L DeMeoChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. redld@channing.harvard.edu.
Margaret ParkerDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. mmparker1@gmail.com.
Marilyn ForemanMorehouse School of Medicine, Atlanta, GA, USA. mforeman@msm.edu.
Barry J MakeDepartment of Medicine, National Jewish Health, Denver, CO, USA. makeb@njhealth.org.
Robert L JensenDivision of Pulmonary, Allergy & Critical Care Medicine, LDS Hospital, Salt Lake City, UT, USA. ldrjens1@ihc.com.
Richard CasaburiLos Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, CA, USA. casaburi@ucla.edu.
David A LomasWolfson Institute for Biomedical Research, University College London, London, UK. d.lomas@ucl.ac.uk.
Surya P BhattDivision of Pulmonary, Allergy, and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, AL, USA. spbhatt@uab.edu.
Per BakkeDepartment of Clinical Science, University of Bergen, Bergen, Norway. per.bakke@med.uib.no.
Amund GulsvikDepartment of Clinical Science, University of Bergen, Bergen, Norway. amund.gulsvik@med.uib.no.
James D CrapoDepartment of Medicine, National Jewish Health, Denver, CO, USA. crapoj@njc.org.
Terri H BeatyDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. tbeaty@jhsph.edu.
Nan M LairdDepartment of Biostatistics, Harvard School of Public Health, Boston, MA, USA. nanlaird@gmail.com.
Christoph LangeDepartment of Biostatistics, Harvard School of Public Health, Boston, MA, USA. langech2007@gmail.com.
John E HokansonDepartment of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. John.Hokanson@ucdenver.edu.
Edwin K SilvermanChanning Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. ed.silverman@channing.harvard.edu.
ECLIPSE Investigators
COPDGene Investigators
Brigham and Women's Hospital · USHarvard University · USJohns Hopkins University · USNational Jewish Health · USUniversity of Alabama at Birmingham · USColorado School of Public Health · USLDS Hospital · USThe Lundquist Institute · USUniversity of Bergen · NOUniversity of Colorado Anschutz Medical Campus · USWolfson Foundation · GB

Funding

Genetic Epidemiology of COPDU01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2007 to 2021
$56.9M
Metabolomic signatures of empysema and COPD progression in the COPDGene cohortR01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2012 to 2016
$31.1M
Genetic Epidemiology of COPDU01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2021
$20.7M
(2 of 2) Genetic Epidemiology of COPDR01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2012 to 2016
$18.9M
Systems Biology, Bioinformatics, and BiostatisticsP01HL105339 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2011 to 2015
$12.2M
Statistical GeneticsP01HL083069 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2007 to 2011
$12.2M
GRADUATE TRAINING IN BIOSTATISTICST32ES007142 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI Brent Andrew Coull · 1985 to 2026
$11.9M
Using Integrative Genomics To Identify and Characterize Emphysema-Associated eQTLR01HL124233 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CASTALDI, PETER · 2014 to 2024
$7.1M
Identifying Genetic Determinants of Severe, Early-Onset COPDR01HL113264 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CHO, MICHAEL H., SILVERMAN, EDWIN K · 2012 to 2016
$6.0M
Genetic Determinants of COPD in Diverse Ethnic GroupsR01HL084323 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2010
$2.6M
Community Assist of Southern ArizonaR25ES011080 · NIEHS · CHILD AND FAMILY RESOURCES, INC. · PI ESTRADA, RAMON M · 2001 to 2004
$771k
Common Genetic Pathways Underlying CVD and COPDK01HL125858 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI LUTZ, SHARON MARIE · 2015 to 2019
$721k
NHLBI NIH HHS K01 HL125858NHLBI NIH HHS K01HL125858NHLBI NIH HHS K08 HL097029NHLBI NIH HHS P01 HL083069NHLBI NIH HHS P01 HL105339NHLBI NIH HHS R01 HL084323NHLBI NIH HHS R01 HL089856NHLBI NIH HHS R01 HL089897NHLBI NIH HHS R01 HL113264NHLBI NIH HHS R01 HL124233NHLBI NIH HHS U01 HL089856NHLBI NIH HHS U01 HL089897NIEHS NIH HHS R25 ES011080NIEHS NIH HHS T32 ES007142
6 · The paper itself

Abstract

backgroundPulmonary function decline is a major contributor to morbidity and mortality among smokers. Post bronchodilator FEV1 and FEV1/FVC ratio are considered the standard assessment of airflow obstruction. We performed a genome-wide association study (GWAS) in 9919 current and former smokers in the COPDGene study (6659 non-Hispanic Whites [NHW] and 3260 African Americans [AA]) to identify associations with spirometric measures (post-bronchodilator FEV1 and FEV1/FVC). We also conducted meta-analysis of FEV1 and FEV1/FVC GWAS in the COPDGene, ECLIPSE, and GenKOLS cohorts (total n = 13,532).

resultsAmong NHW in the COPDGene cohort, both measures of pulmonary function were significantly associated with SNPs at the 15q25 locus [containing CHRNA3/5, AGPHD1, IREB2, CHRNB4] (lowest p-value = 2.17 × 10(-11)), and FEV1/FVC was associated with a genomic region on chromosome 4 [upstream of HHIP] (lowest p-value = 5.94 × 10(-10)); both regions have been previously associated with COPD. For the meta-analysis, in addition to confirming associations to the regions near CHRNA3/5 and HHIP, genome-wide significant associations were identified for FEV1 on chromosome 1 [TGFB2] (p-value = 8.99 × 10(-9)), 9 [DBH] (p-value = 9.69 × 10(-9)) and 19 [CYP2A6/7] (p-value = 3.49 × 10(-8)) and for FEV1/FVC on chromosome 1 [TGFB2] (p-value = 8.99 × 10(-9)), 4 [FAM13A] (p-value = 3.88 × 10(-12)), 11 [MMP3/12] (p-value = 3.29 × 10(-10)) and 14 [RIN3] (p-value = 5.64 × 10(-9)).

conclusionsIn a large genome-wide association study of lung function in smokers, we found genome-wide significant associations at several previously described loci with lung function or COPD. We additionally identified a novel genome-wide significant locus with FEV1 on chromosome 9 [DBH] in a meta-analysis of three study populations.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyBlack or African AmericanBlack PeopleBronchodilator AgentsChromosomes, Human, Pair 15Chromosomes, Human, Pair 4Cohort StudiesFemaleForced Expiratory VolumeGenome, HumanHumansMaleMeta-Analysis as TopicMiddle AgedBronchodilator Agents

Identifiers

PMID26634245
PMCPMC4668640
OpenAlexW2187583278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.