Evidence map›Paper›PMID 26633548›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Observed and expected frequencies of structural hemoglobin variants in newborn screening surveys in Africa and the Middle East: deviations from Hardy-Weinberg equilibrium.

Frédéric B Piel, Thomas V Adamkiewicz, Djesika Amendah, Thomas N Williams, Sunetra Gupta, Scott D Grosse

Erratum issuedAbstract readComparative Study
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  13. Surveillance for sickle cell disease, United Republic of Tanzania.Bulletin of the World Health Organization · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Frédéric B PielDepartment of Zoology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-8131-7728
Thomas V AdamkiewiczDepartment of Family Medicine, Morehouse School of Medicine, Atlanta, Georgia, USA.
Djesika AmendahAfrican Population and Health Research Center, Nairobi, Kenya.
Thomas N WilliamsKenya Medical Research Institute-Wellcome Trust Programme, Centre for Geographic Medicine Research-Coast, Kilifi District Hospital, Kilifi, Kenya.ORCID http://orcid.org/0000-0003-4456-2382
Sunetra GuptaDepartment of Zoology, University of Oxford, Oxford, UK.
Scott D GrosseNational Center on Birth Defects and Developmental Disabilities, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.ORCID http://orcid.org/0000-0003-1078-6855

Funding

Intramural CDC HHS CC999999Medical Research Council MR/L01341X/1Wellcome Trust 091758Wellcome Trust 092654
6 · The paper itself

Abstract

purposeOur objective was to compare observed and expected genotype proportions from newborn screening surveys of structural hemoglobin variants.

methodsWe conducted a systematic review of newborn screening surveys of hemoglobins S and C in Africa and the Middle East. We compared observed frequencies to those expected assuming Hardy-Weinberg equilibrium (HWE). Significant deviations were identified by an exact test. The fixation index FIS was calculated to assess excess homozygosity. We compared newborn estimates corrected and uncorrected for HWE deviations using demographic data.

resultsSixty samples reported genotype counts for hemoglobin variants in Africa and the Middle East. Observed and expected counts matched in 27%. The observed number of sickle cell anemia (SCA) individuals was higher than expected in 42 samples, reaching significance (P < 0.05) in 24. High FIS values were common across the study regions. The estimated total number of newborns with SCA, corrected based on FIS, was 33,261 annual births instead of 24,958 for the 38 samples across sub-Saharan Africa and 1,109 annual births instead of 578 for 12 samples from the Middle East.

conclusionDifferences between observed and expected genotype frequencies are common in surveys of hemoglobin variants in the study regions. Further research is required to identify and quantify factors responsible for such deviations. Estimates based on HWE might substantially underestimate the annual number of SCA-affected newborns (up to one-third in sub-Saharan Africa and one-half in the Middle East).

Indexed as

Gene FrequencyAfricaAnemia, Sickle CellGenetic VariationGenotypeHealth SurveysHemoglobin CHemoglobin, SickleHumansInfant, NewbornMiddle EastNeonatal ScreeningHemoglobin CHemoglobin, Sickle

Identifiers

PMID26633548
PMCPMC4775377

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.