Evidence map›Paper›PMID 26633510›Full record

ArticleToxins2015

Mass Spectrometry-Based Method of Detecting and Distinguishing Type 1 and Type 2 Shiga-Like Toxins in Human Serum.

Christopher J Silva, Melissa L Erickson-Beltran, Craig B Skinner, Stephanie A Patfield, Xiaohua He

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christopher J SilvaWestern Regional Research Center, United States Department of Agriculture, Albany, CA 94710, USA. christopher.silva@ars.usda.gov.
Melissa L Erickson-BeltranWestern Regional Research Center, United States Department of Agriculture, Albany, CA 94710, USA. christopher.silva@ars.usda.gov.
Craig B SkinnerWestern Regional Research Center, United States Department of Agriculture, Albany, CA 94710, USA. melissa.erickson@ars.usda.gov.
Stephanie A PatfieldWestern Regional Research Center, United States Department of Agriculture, Albany, CA 94710, USA. craig.skinner@ars.usda.gov.
Xiaohua HeWestern Regional Research Center, United States Department of Agriculture, Albany, CA 94710, USA. stephanie.patfield@ars.usda.gov.
United States Department of Agriculture · USWestern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga-like toxins (verotoxins) are responsible for the virulence associated with a variety of foodborne bacterial pathogens. Direct detection of toxins requires a specific and sensitive technique. In this study, we describe a mass spectrometry-based method of analyzing the tryptic decapeptides derived from the non-toxic B subunits. A gene encoding a single protein that yields a set of relevant peptides upon digestion with trypsin was designed. The (15)N-labeled protein was prepared by growing the expressing bacteria in minimal medium supplemented with (15)NH₄Cl. Trypsin digestion of the (15)N-labeled protein yields a set of (15)N-labeled peptides for use as internal standards to identify and quantify Shiga or Shiga-like toxins. We determined that this approach can be used to detect, quantify and distinguish among the known Shiga toxins (Stx) and Shiga-like toxins (Stx1 and Stx2) in the low attomole range (per injection) in complex media, including human serum. Furthermore, Stx1a could be detected and distinguished from the newly identified Stx1e in complex media. As new Shiga-like toxins are identified, this approach can be readily modified to detect them. Since intact toxins are digested with trypsin prior to analysis, the handling of intact Shiga toxins is minimized. The analysis can be accomplished within 5 h.

Indexed as

HumansMass SpectrometryPeptidesShiga Toxin 1Shiga Toxin 2PeptidesShiga Toxin 1Shiga Toxin 2EHECEnterobacterKeywords: mass spectrometrymultiple reaction monitoring method (MRM)serumshigatoxigenic and enterohemorrhagic strains of Escherichia coliShiga toxinsSTECverotoxins

Identifiers

PMID26633510
PMCPMC4690125
OpenAlexW2188990553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.