Evidence map›Paper›PMID 26633374›Full record

ArticleInternational journal of molecular sciences2015

Cloning and Expression Analysis of Vvlcc3, a Novel and Functional Laccase Gene Possibly Involved in Stipe Elongation.

Yuanping Lu, Guangmei Wu, Lingdan Lian, Lixian Guo, Wei Wang, Zhiyun Yang, Juan Miao, Bingzhi Chen, Baogui Xie

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  6. Frontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yuanping LuMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. yuanplu1106@163.com.
Guangmei WuCollege of Horticulture Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. wgm_2014@163.com.
Lingdan LianMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. Letitiaddan@163.com.
Lixian GuoMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. LXG20150331@163.com.
Wei WangMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. uniwangwei@163.com.
Zhiyun YangMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. zhiyunyang1@126.com.
Juan MiaoMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. 18396511363@163.com.
Bingzhi ChenMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. cbz_2006@163.com.
Baogui XieMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China. mrcfafu@163.com.
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Volvariella volvacea, usually harvested in its egg stage, is one of the most popular mushrooms in Asia. The rapid transition from the egg stage to elongation stage, during which the stipe stretches to almost full length leads to the opening of the cap and rupture of the universal veil, and is considered to be one of the main factors that negatively impacts the yield and value of V. volvacea. Stipe elongation is a common phenomenon in mushrooms; however, the mechanisms, genes and regulation involved in stipe elongation are still poorly understood. In order to study the genes related to the stipe elongation, we analyzed the transcription of laccase genes in stipe tissue of V. volvacea, as some laccases have been suggested to be involved in stipe elongation in Flammulina velutipes. Based on transcription patterns, the expression of Vvlcc3 was found to be the highest among the 11 laccase genes. Moreover, phylogenetic analysis showed that VvLCC3 has a high degree of identity with other basidiomycete laccases. Therefore, we selected and cloned a laccase gene, named Vvlcc3, a cDNA from V. volvacea, and expressed the cDNA in Pichia pastoris. The presence of the laccase signature L1-L4 on the deduced protein sequence indicates that the gene encodes a laccase. Phylogenetic analysis showed that VvLCC3 clusters with Coprinopsis cinerea laccases. The ability to catalyze ABTS (2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) oxidation proved that the product of the Vvlcc3 gene was a functional laccase. We also found that the expression of the Vvlcc3 gene in V. volvacea increased during button stage to the elongation stage; it reached its peak in the elongation stage, and then decreased in the maturation stage, which was similar to the trend in the expression of Fv-lac3 and Fv-lac5 in F. velutipes stipe tissue. The similar trend in expression level of these laccase genes of F. velutipes suggested that this gene could be involved in stipe elongation in V. volvacea.

Indexed as

Cloning, MolecularGene ExpressionAmino Acid SequenceBasidiomycotaFruiting Bodies, FungalGene Expression ProfilingGene Expression Regulation, FungalGene OrderGenetic LociGenome, FungalLaccaseMolecular Sequence DataMultigene FamilyPhylogenySequence AlignmentTranscriptomeLaccaseenzymefruiting body formationlaccaseVolvariella volvacea

Identifiers

PMID26633374
PMCPMC4691058
OpenAlexW2182830829

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.