Evidence map›Paper›PMID 26633373›Full record

ArticleInternational journal of molecular sciences2015

Simultaneous Analysis of SEPT9 Promoter Methylation Status, Micronuclei Frequency, and Folate-Related Gene Polymorphisms: The Potential for a Novel Blood-Based Colorectal Cancer Biomarker.

Gloria Ravegnini, Juan Manuel Zolezzi Moraga, Francesca Maffei, Muriel Musti, Corrado Zenesini, Vittorio Simeon, Giulia Sammarini, Davide Festi, Patrizia Hrelia, Sabrina Angelini

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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  7. Significant association ofOncology letters · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Gloria RavegniniDepartment of Pharmacy and Biotechnology, University of Bologna, via Irnerio 48, 40126 Bologna, Italy. gloria.ravegnini2@unibo.it.
Juan Manuel Zolezzi MoragaDepartment of Pharmacy and Biotechnology, University of Bologna, via Irnerio 48, 40126 Bologna, Italy. juan.zolezzimoraga@gmail.com.
Francesca MaffeiDepartment for Life Quality Studies, University of Bologna, Corso d'Augusto 237, 47921 Rimini, Italy. francesca.maffei@unibo.it.
Muriel MustiUnit of Epidemiology, Health Promotion and Risk Communication, Department of Public Health, Bologna Local Health Authority, Via del Seminario1, 40068 San lazzaro di Savena, Italy. m.musti@ausl.bologna.it.
Corrado ZenesiniUnit of Epidemiology and Biostatistics, IRCCS, ISNB, Via Altura 3, 40139 Bologna, Italy. zenesinicorrado@gmail.com.
Vittorio SimeonLaboratory of Pre-Clinical and Translational Research Reference Cancer Center of Basilicata, Scientific Institute of Hospitalization and Treatment, Rionero in Vulture, 85028 Potenza, Italy. vittorio.simeon@crob.it.
Giulia SammariniDepartment of Pharmacy and Biotechnology, University of Bologna, via Irnerio 48, 40126 Bologna, Italy. giulia.sammarini2@unibo.it.
Davide FestiDepartment of Clinical Medicine, University of Bologna, Via Massarenti 9, 40138 Bologna, Italy. davide.festi@unibo.it.
Patrizia HreliaDepartment of Pharmacy and Biotechnology, University of Bologna, via Irnerio 48, 40126 Bologna, Italy. patriza.hrelia@unibo.it.
Sabrina AngeliniDepartment of Pharmacy and Biotechnology, University of Bologna, via Irnerio 48, 40126 Bologna, Italy. s.angelini@unibo.it.
University of Bologna · ITCentro di Riferimento Oncologico della Basilicata · ITIstituto delle Scienze Neurologiche di Bologna · ITUniversity of Tarapacá · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One challenge in colorectal cancer (CRC) is identifying novel biomarkers to be introduced in screening programs. The present study investigated the promoter methylation status of the SEPT9 gene in peripheral blood samples of subjects' positive fecal occult blood test (FOBT). In order to add new insights, we investigated the association between SEPT9 promoter methylation and micronuclei frequency, and polymorphisms in the folate-related pathway genes. SEPT9 promoter methylation, micronuclei frequency, and genotypes were evaluated on 74 individuals' FOBT positive. Individuals were subjected to a colonoscopy that provided written informed consent for study participation. SEPT9 promoter methylation status was significantly lower in the CRC group than controls (p = 0.0006). In contrast, the CaCo2 cell-line, analyzed as a tissue specific model of colon adenocarcinoma, showed a significantly higher percentage of SEPT9 promoter methylation compared to the CRC group (p < 0.0001). Linear regression analysis showed an inverse correlation between micronuclei frequency and the decrease in the methylation levels of SEPT9 promoter region among CRC patients (β = -0.926, p = 0.0001). With regard to genotype analysis, we showed the involvement of the DHFR polymorphism (rs70991108) in SEPT9 promoter methylation level in CRC patients only. In particular, the presence of at least one 19 bp del allele significantly correlates with decreased SEPT9 promoter methylation, compared to the 19 bp ins/ins genotype (p = 0.007). While remaining aware of the strengths and limitations of the study, this represents the first evidence of a novel approach for the early detection of CRC, using SEPT9 promoter methylation, micronuclei frequency and genotypes, with the potential to improve CRC risk assessment.

Indexed as

DNA MethylationMicronuclei, Chromosome-DefectivePolymorphism, Single NucleotidePromoter Regions, GeneticAdenomatous Polyposis ColiAgedAged, 80 and overAllelesBiomarkers, TumorCase-Control StudiesCell Line, TumorColorectal NeoplasmsFemaleFolic AcidGene FrequencyGenotypeBiomarkers, TumorFolic AcidSEPTIN9 protein, humanSeptinscolorectal cancergenetic polymorphismsmicronucleiSEPT9 methylation

Identifiers

PMID26633373
PMCPMC4691060
OpenAlexW2184198436

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.