Evidence map›Paper›PMID 26633009›Full record

ArticlePloS one2015

A Proteomics Approach to Investigate miR-153-3p and miR-205-5p Targets in Neuroblastoma Cells.

Ketan S Patil, Indranil Basak, Ramavati Pal, Hsin-Pin Ho, Guido Alves, Emmanuel J Chang, Jan Petter Larsen, Simon Geir Møller

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. MiR-205 RegulatesIranian journal of public health · 2022
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Prefoldin Function in Cellular Protein Homeostasis and Human Diseases.Frontiers in cell and developmental biology · 2021
    Review
  11. Review
  12. Oxidative stress-induced angiogenesis is mediated by miR-205-5p.Journal of cellular and molecular medicine · 2020
    Article
  13. Article
  14. Review
  15. Article
  16. lncRNA MALAT1/miR-205-5p axis regulates MPPAmerican journal of translational research · 2018
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ketan S PatilDepartment of Biological Sciences, St. John's University, New York, NY, 11439, United States of America.
Indranil BasakDepartment of Biological Sciences, St. John's University, New York, NY, 11439, United States of America.
Ramavati PalDepartment of Biological Sciences, St. John's University, New York, NY, 11439, United States of America.
Hsin-Pin HoDepartment of Chemistry, York College and the Graduate Center, The City University of New York, New York, NY, 11451, United States of America.
Guido AlvesNorwegian Center for Movement Disorders, Stavanger University Hospital, 4068, Stavanger, Norway.
Emmanuel J ChangDepartment of Chemistry, York College and the Graduate Center, The City University of New York, New York, NY, 11451, United States of America.
Jan Petter LarsenNorwegian Center for Movement Disorders, Stavanger University Hospital, 4068, Stavanger, Norway.
Simon Geir MøllerDepartment of Biological Sciences, St. John's University, New York, NY, 11439, United States of America.
Stavanger University Hospital · NOSt. John's University · USCity University of New York · USThe Graduate Center, CUNY · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs are key regulators associated with numerous diseases. In HEK293 cells, miR-153-3p and miR-205-5p down-regulate alpha-synuclein (SNCA) and Leucine-rich repeat kinase 2 (LRRK2), two key proteins involved in Parkinson's disease (PD). We have used two-dimensional gel electrophoresis (2D-PAGE) coupled to mass spectrometry (MS) to identify a spectrum of miR-153-3p and miR-205-5p targets in neuronal SH-SY5Y cells. We overexpressed and inhibited both microRNAs in SH-SY5Y cells and through comparative proteomics profiling we quantified ~240 protein spots from each analysis. Combined, thirty-three protein spots were identified showing significant (p-value < 0.05) changes in abundance. Modulation of miR-153-3p resulted in seven up-regulated proteins and eight down-regulated proteins. miR-205 modulation resulted in twelve up-regulated proteins and six down-regulated proteins. Several of the proteins are associated with neuronal processes, including peroxiredoxin-2 and -4, cofilin-1, prefoldin 2, alpha-enolase, human nucleoside diphosphate kinase B (Nm23) and 14-3-3 protein epsilon. Many of the differentially expressed proteins are involved in diverse pathways including metabolism, neurotrophin signaling, actin cytoskeletal regulation, HIF-1 signaling and the proteasome indicating that miR-153-3p and miR-205-5p are involved in the regulation of a wide variety of biological processes in neuroblastoma cells.

Indexed as

ProteomicsCell CycleCell Line, TumorElectrophoresis, Gel, Two-DimensionalGene Expression Regulation, NeoplasticHumansMicroRNAsNeoplasm ProteinsNeuroblastomaTranscription, GeneticMicroRNAsMIR205, humanMIRN153 microRNA, humanNeoplasm Proteins

Identifiers

PMID26633009
PMCPMC4669106
OpenAlexW2191520480

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.