Evidence map›Paper›PMID 26630542›Full record

ArticlePloS one2015

NDK Interacts with FtsZ and Converts GDP to GTP to Trigger FtsZ Polymerisation--A Novel Role for NDK.

Saurabh Mishra, Kishor Jakkala, Ramanujam Srinivasan, Muthu Arumugam, Raghavendra Ranjeri, Prabuddha Gupta, Haryadi Rajeswari, Parthasarathi Ajitkumar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Comparative Transcriptome Profiling of Virulent and AttenuatedFrontiers in cellular and infection microbiology · 2018
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Saurabh MishraDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Kishor JakkalaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Ramanujam SrinivasanDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Muthu ArumugamDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Raghavendra RanjeriDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Prabuddha GuptaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Haryadi RajeswariDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Parthasarathi AjitkumarDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Indian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionNucleoside diphosphate kinase (NDK), conserved across bacteria to humans, synthesises NTP from NDP and ATP. The eukaryotic homologue, the NDPK, uses ATP to phosphorylate the tubulin-bound GDP to GTP for tubulin polymerisation. The bacterial cytokinetic protein FtsZ, which is the tubulin homologue, also uses GTP for polymerisation. Therefore, we examined whether NDK can interact with FtsZ to convert FtsZ-bound GDP and/or free GDP to GTP to trigger FtsZ polymerisation.

methodsRecombinant and native NDK and FtsZ proteins of Mycobacterium smegmatis and Mycobacterium tuberculosis were used as the experimental samples. FtsZ polymersation was monitored using 90° light scattering and FtsZ polymer pelleting assays. The γ32P-GTP synthesised by NDK from GDP and γ32P-ATP was detected using thin layer chromatography and quantitated using phosphorimager. The FtsZ bound 32P-GTP was quantitated using phosphorimager, after UV-crosslinking, followed by SDS-PAGE. The NDK-FtsZ interaction was determined using Ni2+-NTA-pulldown assay and co-immunoprecipitation of the recombinant and native proteins in vitro and ex vivo, respectively.

resultsNDK triggered instantaneous polymerisation of GDP-precharged recombinant FtsZ in the presence of ATP, similar to the polymerisation of recombinant FtsZ (not GDP-precharged) upon the direct addition of GTP. Similarly, NDK triggered polymerisation of recombinant FtsZ (not GDP-precharged) in the presence of free GDP and ATP as well. Mutant NDK, partially deficient in GTP synthesis from ATP and GDP, triggered low level of polymerisation of MsFtsZ, but not of MtFtsZ. As characteristic of NDK's NTP substrate non-specificity, it used CTP, TTP, and UTP also to convert GDP to GTP, to trigger FtsZ polymerisation. The NDK of one mycobacterial species could trigger the polymerisation of the FtsZ of another mycobacterial species. Both the recombinant and the native NDK and FtsZ showed interaction with each other in vitro and ex vivo, alluding to the possibility of direct phosphorylation of FtsZ-bound GDP by NDK.

conclusionIrrespective of the bacterial species, NDK interacts with FtsZ in vitro and ex vivo and, through the synthesis of GTP from FtsZ-bound GDP and/or free GDP, and ATP (CTP/TTP/UTP), triggers FtsZ polymerisation. The possible biological context of this novel activity of NDK is presented.

Indexed as

Adenosine TriphosphateBacterial ProteinsCytoskeletal ProteinsGuanosine DiphosphateGuanosine TriphosphateMicroscopy, Electron, TransmissionMycobacterium smegmatisMycobacterium tuberculosisNucleoside-Diphosphate KinasePolymerizationProtein Structure, QuaternaryRecombinant ProteinsAdenosine TriphosphateBacterial ProteinsCytoskeletal ProteinsFtsZ protein, BacteriaGuanosine DiphosphateGuanosine TriphosphateNucleoside-Diphosphate KinaseRecombinant Proteins

Identifiers

PMID26630542
PMCPMC4668074
OpenAlexW2183397565

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.