Evidence map›Paper›PMID 26629335›Full record

ArticleF1000Research2015

Embryo-lethal phenotypes in early abp1 mutants are due to disruption of the neighboring BSM gene.

Jaroslav Michalko, Marta Dravecká, Tobias Bollenbach, Jiří Friml

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Fourteen Stations of Auxin.Cold Spring Harbor perspectives in biology · 2022
    Review
  5. The Story of Auxin-Binding Protein 1 (ABP1).Cold Spring Harbor perspectives in biology · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Non-canonical auxin signalling: fast and curious.Journal of experimental botany · 2019
    Article
  10. Auxin Signaling.Plant physiology · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Auxin perception and downstream events.Current opinion in plant biology · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Jaroslav MichalkoInstitute of Science and Technology Austria (IST Austria), Klosterneuburg, 3400, Austria ; Institute of Plant Genetics and Biotechnology, Slovak Academy of Sciences, Nitra, 95007, Slovakia.
Marta DraveckáInstitute of Science and Technology Austria (IST Austria), Klosterneuburg, 3400, Austria.
Tobias BollenbachInstitute of Science and Technology Austria (IST Austria), Klosterneuburg, 3400, Austria.
Jiří FrimlInstitute of Science and Technology Austria (IST Austria), Klosterneuburg, 3400, Austria.
Institute of Science and Technology Austria · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Auxin Binding Protein1 (ABP1) has been identified based on its ability to bind auxin with high affinity and studied for a long time as a prime candidate for the extracellular auxin receptor responsible for mediating in particular the fast non-transcriptional auxin responses. However, the contradiction between the embryo-lethal phenotypes of the originally described Arabidopsis T-DNA insertional knock-out alleles ( abp1-1 and abp1-1s) and the wild type-like phenotypes of other recently described loss-of-function alleles ( abp1-c1 and abp1-TD1) questions the biological importance of ABP1 and relevance of the previous genetic studies. Here we show that there is no hidden copy of the ABP1 gene in the Arabidopsis genome but the embryo-lethal phenotypes of abp1-1 and abp1-1s alleles are very similar to the knock-out phenotypes of the neighboring gene, BELAYA SMERT ( BSM). Furthermore, the allelic complementation test between bsm and abp1 alleles shows that the embryo-lethality in the abp1-1 and abp1-1s alleles is caused by the off-target disruption of the BSM locus by the T-DNA insertions. This clarifies the controversy of different phenotypes among published abp1 knock-out alleles and asks for reflections on the developmental role of ABP1.

Indexed as

ABP1allelismAuxin-binding protein 1BELAYA SMERTBSMembryo-lethalityshort read DNA mapping

Identifiers

PMID26629335
PMCPMC4642851
OpenAlexW2157209042

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.