Evidence map›Paper›PMID 26629322›Full record

ArticleWorld journal of biological chemistry2015

DNA microarray unravels rapid changes in transcriptome of MK-801 treated rat brain.

Yuka Kobayashi, Sofya P Kulikova, Junko Shibato, Randeep Rakwal, Hiroyuki Satoh, Didier Pinault, Yoshinori Masuo

Open access · diamondAbstract read
In one paragraph

Article in World journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yuka KobayashiYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Sofya P KulikovaYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Junko ShibatoYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Randeep RakwalYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Hiroyuki SatohYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Didier PinaultYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Yoshinori MasuoYuka Kobayashi, Hiroyuki Satoh, Department of Biomolecular Science, Faculty of Science, Toho University, Chiba 274-8510, Japan.
Obayashi (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigate the impact of MK-801 on gene expression patterns genome wide in rat brain regions.

methodsRats were treated with an intraperitoneal injection of MK-801 [0.08 (low-dose) and 0.16 (high-dose) mg/kg] or NaCl (vehicle control). In a first series of experiment, the frontoparietal electrocorticogram was recorded 15 min before and 60 min after injection. In a second series of experiments, the whole brain of each animal was rapidly removed at 40 min post-injection, and different regions were separated: amygdala, cerebral cortex, hippocampus, hypothalamus, midbrain and ventral striatum on ice followed by DNA microarray (4 × 44 K whole rat genome chip) analysis.

resultsSpectral analysis revealed that a single systemic injection of MK-801 significantly and selectively augmented the power of baseline gamma frequency (30-80 Hz) oscillations in the frontoparietal electroencephalogram. DNA microarray analysis showed the largest number (up- and down- regulations) of gene expressions in the cerebral cortex (378), midbrain (376), hippocampus (375), ventral striatum (353), amygdala (301), and hypothalamus (201) under low-dose (0.08 mg/kg) of MK-801. Under high-dose (0.16 mg/kg), ventral striatum (811) showed the largest number of gene expression changes. Gene expression changes were functionally categorized to reveal expression of genes and function varies with each brain region.

conclusionAcute MK-801 treatment increases synchrony of baseline gamma oscillations, and causes very early changes in gene expressions in six individual rat brain regions, a first report.

Indexed as

DizocilpineDye-swapGene expressionMicroarrayMK801N-Methyl-D-aspartate receptors

Identifiers

PMID26629322
PMCPMC4657125
OpenAlexW2398585837

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.