Evidence map›Paper›PMID 26629308›Full record

ArticleStandards in genomic sciences2015

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Ravi Tiwari, John Howieson, Ron Yates, Rui Tian, Britanny Held, Roxanne Tapia, Cliff Han, Rekha Seshadri, T B K Reddy, Marcel Huntemann and 6 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Complete genome sequence of theStandards in genomic sciences · 2018
    Article
  3. Whole-Genome Sequences of 14 Strains ofGenome announcements · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Ravi TiwariCentre for Rhizobium Studies, Murdoch University, Murdoch, Australia.
John HowiesonCentre for Rhizobium Studies, Murdoch University, Murdoch, Australia.
Ron YatesCentre for Rhizobium Studies, Murdoch University, Murdoch, Australia ; Department of Agriculture and Food, South Perth, Australia.
Rui TianCentre for Rhizobium Studies, Murdoch University, Murdoch, Australia.
Britanny HeldLos Alamos National Laboratory, Bioscience Division, Los Alamos, NM USA.
Roxanne TapiaLos Alamos National Laboratory, Bioscience Division, Los Alamos, NM USA.
Cliff HanLos Alamos National Laboratory, Bioscience Division, Los Alamos, NM USA.
Rekha SeshadriDOE Joint Genome Institute, Walnut Creek, CA USA.
T B K ReddyDOE Joint Genome Institute, Walnut Creek, CA USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, CA USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, CA USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, CA USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, CA USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, CA USA ; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Murdoch, Australia.
Joint Genome Institute · USMurdoch University · AULos Alamos National Laboratory · USAgriculture and Food · AULawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bradyrhizobium sp. WSM1253 is a novel N2-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins (Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arranged into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. This improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project.

Indexed as

nitrogen fixationOrnithopusrhizobiaroot-nodule bacteria

Identifiers

PMID26629308
PMCPMC4665870
OpenAlexW2226110636

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.