Evidence map›Paper›PMID 26627836›Full record

ArticleThe Journal of biological chemistry2016

Distinct Elements in the Proteasomal β5 Subunit Propeptide Required for Autocatalytic Processing and Proteasome Assembly.

Xia Li, Yanjie Li, Cassandra S Arendt, Mark Hochstrasser

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mechanism of autocatalytic activation during proteasome assembly.Nature structural & molecular biology · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Regulation of proteasome assembly and activity in health and disease.Nature reviews. Molecular cell biology · 2018
    Review
  15. Proteasome Structure and Assembly.Journal of molecular biology · 2017
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Xia LiFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and.
Yanjie LiFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and.
Cassandra S Arendtthe Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637.
Mark HochstrasserFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and. Electronic address: mark.hochstrasser@yale.edu.
Yale University · USUniversity of Chicago · US

Funding

Function and Assembly of Eukaryotic ProteasomesR01GM083050 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 2008 to 2019
$3.8M
Degradation of Short Lived Regulatory Protein in YeastR37GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 2009 to 2018
$3.6M
DEGRADTION OF SHORT-LIVED REGULATORY PROTEINS IN YEASTR01GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 1992 to 2020
$3.6M
NIGMS NIH HHS GM046904NIGMS NIH HHS GM083050NIGMS NIH HHS R01 GM046904NIGMS NIH HHS R01 GM083050NIGMS NIH HHS R37 GM046904
6 · The paper itself

Abstract

Eukaryotic 20S proteasome assembly remains poorly understood. The subunits stack into four heteroheptameric rings; three inner-ring subunits (β1, β2, and β5) bear the protease catalytic residues and are synthesized with N-terminal propeptides. These propeptides are removed autocatalytically late in assembly. In Saccharomyces cerevisiae, β5 (Doa3/Pre2) has a 75-residue propeptide, β5pro, that is essential for proteasome assembly and can work in trans. We show that deletion of the poorly conserved N-terminal half of the β5 propeptide nonetheless causes substantial defects in proteasome maturation. Sequences closer to the cleavage site have critical but redundant roles in both assembly and self-cleavage. A conserved histidine two residues upstream of the autocleavage site strongly promotes processing. Surprisingly, although β5pro is functionally linked to the Ump1 assembly factor, trans-expressed β5pro associates only weakly with Ump1-containing precursors. Several genes were identified as dosage suppressors of trans-expressed β5pro mutants; the strongest encoded the β7 proteasome subunit. Previous data suggested that β7 and β5pro have overlapping roles in bringing together two half-proteasomes, but the timing of β7 addition relative to half-mer joining was unclear. Here we report conditions where dimerization lags behind β7 incorporation into the half-mer. Our results suggest that β7 insertion precedes half-mer dimerization, and the β7 tail and β5 propeptide have unequal roles in half-mer joining.

Indexed as

Amino Acid MotifsMolecular ChaperonesProteasome Endopeptidase ComplexProtein MultimerizationProtein PrecursorsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsMolecular ChaperonesPRE2 protein, S cerevisiaeProteasome Endopeptidase Complexproteasome maturation proteinProtein PrecursorsSaccharomyces cerevisiae Proteinschaperonepropeptideproteasomeprotein assemblyprotein degradationubiquitin

Identifiers

PMID26627836
PMCPMC4722473
OpenAlexW2190222425

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.