Evidence map›Paper›PMID 26627834›Full record

ArticleThe Journal of biological chemistry2016

Enzymatic and Structural Characterization of the Major Endopeptidase in the Venus Flytrap Digestion Fluid.

Michael W Risør, Line R Thomsen, Kristian W Sanggaard, Tania A Nielsen, Ida B Thøgersen, Marie V Lukassen, Litten Rossen, Irene Garcia-Ferrer, Tibisay Guevara, Carsten Scavenius and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  7. Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Michael W RisørFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark, the Interdisciplinary Nanoscience Center (iNANO), DK-8000 Aarhus, Denmark.
Line R ThomsenFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark, the Interdisciplinary Nanoscience Center (iNANO), DK-8000 Aarhus, Denmark.
Kristian W SanggaardFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark, the Interdisciplinary Nanoscience Center (iNANO), DK-8000 Aarhus, Denmark.
Tania A Nielsenthe Interdisciplinary Nanoscience Center (iNANO), DK-8000 Aarhus, Denmark.
Ida B ThøgersenFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark.
Marie V LukassenFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark.
Litten RossenFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark.
Irene Garcia-Ferrerthe Proteolysis Laboratory, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona Science Park, c/Baldiri Reixac 15-21, 08028 Barcelona, Catalonia, Spain, and.
Tibisay Guevarathe Proteolysis Laboratory, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona Science Park, c/Baldiri Reixac 15-21, 08028 Barcelona, Catalonia, Spain, and.
Carsten ScaveniusFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark.
Ernst MeinjohannsDuPont Industrial Biosciences, DK-8220 Brabrand, Denmark.
F Xavier Gomis-Rüththe Proteolysis Laboratory, Department of Structural Biology ("María de Maeztu" Unit of Excellence), Molecular Biology Institute of Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona Science Park, c/Baldiri Reixac 15-21, 08028 Barcelona, Catalonia, Spain, and.
Jan J EnghildFrom the Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus, Denmark, the Interdisciplinary Nanoscience Center (iNANO), DK-8000 Aarhus, Denmark, jje@mbg.au.dk.
Aarhus University · DKInstitut de Biologia Molecular de Barcelona · ESDuPont (Denmark) · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carnivorous plants primarily use aspartic proteases during digestion of captured prey. In contrast, the major endopeptidases in the digestive fluid of the Venus flytrap (Dionaea muscipula) are cysteine proteases (dionain-1 to -4). Here, we present the crystal structure of mature dionain-1 in covalent complex with inhibitor E-64 at 1.5 Å resolution. The enzyme exhibits an overall protein fold reminiscent of other plant cysteine proteases. The inactive glycosylated pro-form undergoes autoprocessing and self-activation, optimally at the physiologically relevant pH value of 3.6, at which the protective effect of the pro-domain is lost. The mature enzyme was able to efficiently degrade a Drosophila fly protein extract at pH 4 showing high activity against the abundant Lys- and Arg-rich protein, myosin. The substrate specificity of dionain-1 was largely similar to that of papain with a preference for hydrophobic and aliphatic residues in subsite S2 and for positively charged residues in S1. A tentative structure of the pro-domain was obtained by homology modeling and suggested that a pro-peptide Lys residue intrudes into the S2 pocket, which is more spacious than in papain. This study provides the first analysis of a cysteine protease from the digestive fluid of a carnivorous plant and confirms the close relationship between carnivorous action and plant defense mechanisms.

Indexed as

AnimalsCaseinsCattleChromatography, LiquidCircular DichroismCloning, MolecularCrystallography, X-RayCysteine EndopeptidasesCysteine ProteasesDroseraceaeDrosophila melanogasterGlycosylationHydrogen-Ion ConcentrationHydrophobic and Hydrophilic InteractionsKineticsLeucineCaseinsCysteine EndopeptidasesCysteine ProteasesE 64LeucineLysinePapainPlant Proteinscysteine proteasesdigestionenzymeenzyme structurepapainplant biochemistryplant carnivoryplant physiologyproteinaseVenus flytrap

Identifiers

PMID26627834
PMCPMC4732211
OpenAlexW2186800652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.