Evidence map›Paper›PMID 26627478›Full record

ArticleBMC molecular biology2015

Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cells.

Yuan Lu, Jilong Li, Jianlin Cheng, Dennis B Lubahn

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yuan LuDepartment of Biochemistry, University of Missouri, Columbia, MO, 65211, USA. y_l54@txstate.edu.
Jilong LiMU Center for Botanical Interaction Studies, University of Missouri, Columbia, MO, 65211, USA. jl482@mail.missouri.edu.
Jianlin ChengMU Center for Botanical Interaction Studies, University of Missouri, Columbia, MO, 65211, USA. chengji@missouri.edu.
Dennis B LubahnDepartment of Biochemistry, University of Missouri, Columbia, MO, 65211, USA. lubahnd@missouri.edu.
University of Missouri · US

Funding

The Interactions Core/Mark McintoshP50AT006273 · NCCIH · UNIVERSITY OF MISSOURI-COLUMBIA · PI LUBAHN, DENNIS B · 2010 to 2014
$7.4M
NCCIH NIH HHS P50 AT006273NCCIH NIH HHS P50AT006273
6 · The paper itself

Abstract

backgroundOrphan nuclear receptor estrogen related receptor β (Esrrb or ERRβ) is well known in stem cells and early embryonic development. However, little is known about its function in cancer.

methodWe investigated the mRNA profile alterations induced by Esrrb expression and its synthetic ligand DY131 in human prostate cancer DU145 cells via RNA-Seq analysis.

resultsWe distinguished 67 mRNAs differentially expressed by Esrrb alone. Although DY131 alone did not change any gene, treatment of DY131 in the presence of Esrrb altered 1161 mRNAs. These observations indicated Esrrb had both ligand-independent and ligand-dependent activity. When Esrrb was expressed, DY131 treatment further regulated 15 Esrrb-altered mRNAs. DY131 acted as an antagonist for 11 of 15 mRNAs (wdr52, f13a1, pxdn, spns2, loc100506599, tagln, loc441454, tkel1, sema3f, zcwpw2, sdc2) and as an agonist for 4 of the 15 mRNAs (rarres3, oasl, padi2, ddx60). Gene ontology analyses showed altered genes are related to transcription and translation regulation, cell proliferation and apoptosis regulation, and cellular metabolism.

conclusionOur results characterized mRNA profiles in DU145 prostate cancer cells driven by Esrrb expression and Esrrb ligand DY131, and provided multiple markers to characterize Esrrb's function in Esrrb research.

Indexed as

ApoptosisBase SequenceCarcinogenesisCell Line, TumorCell ProliferationEmbryonic Stem CellsEnergy MetabolismGene Expression ProfilingGenetic MarkersHEK293 CellsHigh-Throughput Nucleotide SequencingHumansMaleProstatic NeoplasmsReceptors, EstrogenRNA, MessengerESRRB protein, humanGenetic MarkersReceptors, EstrogenRNA, Messenger

Identifiers

PMID26627478
PMCPMC4667504
OpenAlexW2182097037

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.