Evidence map›Paper›PMID 26626352›Full record

ArticleJournal of microbiology (Seoul, Korea)2015

Characterization of cell death in Escherichia coli mediated by XseA, a large subunit of exonuclease VII.

Hyeim Jung, Junwei Liang, Yuna Jung, Dongbin Lim

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Identification of candidate nucleomodulins in ESKAPE bacteria -Frontiers in cellular and infection microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hyeim JungSchool of Systems Biomedical Science, Soongsil University, Seoul, 06978, Republic of Korea.
Junwei LiangSchool of Systems Biomedical Science, Soongsil University, Seoul, 06978, Republic of Korea.
Yuna JungSchool of Systems Biomedical Science, Soongsil University, Seoul, 06978, Republic of Korea.
Dongbin LimSchool of Systems Biomedical Science, Soongsil University, Seoul, 06978, Republic of Korea. dblim@ssu.ac.kr.
Soongsil University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exonuclease VII (ExoVII) of Escherichia coli is a single strandspecific DNA nuclease composed of two different subunits: the large subunit, XseA, and the small subunit, XseB. In this study, we found that multicopy single-stranded DNAs (msDNAs), Ec83 and Ec78, are the in vivo substrates of ExoVII; the enzyme cuts the phosphodiester bond between the fourth and fifth nucleotides from the 5'end. We used this msDNA cleavage to assess ExoVII activity in vivo. Both subunits were required for enzyme activity. Expression of XseA without XseB caused cell death, even though no ExoVII activity was detected. The lethality caused by XseA was rescued by surplus XseB. In XseA-induced death, cells were elongated and multinucleated, and their chromosomes were fragmented and condensed; these are the morphological hallmarks of apoptotic cell death in bacteria. A putative caspase recognition sequence (FVAD) was found in XseA, and its hypothetical caspase product with 257 amino acids was as active as the intact protein in inducing cell death. We propose that under ordinary conditions, XseA protects chromosome as a component of the ExoVII enzyme, but in some conditions, the protein causes cell death; the destruction of cell is probably carried out by the amino terminal fragment derived from the cleavage of XseA by caspase-like enzyme.

Indexed as

DNA CleavageCloning, MolecularDNA, BacterialDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsExodeoxyribonucleasesMutationProtein SubunitsProteolysisRNA, BacterialDNA, BacterialDNA, Single-StrandedEscherichia coli ProteinsExodeoxyribonucleasesexodeoxyribonuclease VIImsDNAProtein SubunitsRNA, BacterialXseA protein, E coliXseB protein, E coliapoptosisapoptosis-like cell deathbacterial cell deathexonuclease VIIExoVIImsDNAretronXseA

Identifiers

PMID26626352
OpenAlexW2247503929

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.