Evidence map›Paper›PMID 26625296›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Structures of plasmepsin II from Plasmodium falciparum in complex with two hydroxyethylamine-based inhibitors.

Rosario Recacha, Janis Leitans, Inara Akopjana, Lilija Aprupe, Peteris Trapencieris, Kristaps Jaudzems, Aigars Jirgensons, Kaspars Tars

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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  5. Accelerating Cryptic Pocket Discovery Using AlphaFold.Journal of chemical theory and computation · 2023
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  8. Review
  9. Article
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  11. Article
  12. Crystal structure of Plasmodium falciparum proplasmepsin IV: the plasticity of proplasmepsins.Acta crystallographica. Section F, Structural biology communications · 2016
    Article
  13. Evaluation of Antimalarial Activity of Ethanolic Extract ofJournal of evidence-based integrative medicine
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Rosario RecachaLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.
Janis LeitansBiomedical Research and Study Centre, Ratsupites 1, Riga, LV-1067, Latvia.
Inara AkopjanaBiomedical Research and Study Centre, Ratsupites 1, Riga, LV-1067, Latvia.
Lilija AprupeBiomedical Research and Study Centre, Ratsupites 1, Riga, LV-1067, Latvia.
Peteris TrapencierisLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.
Kristaps JaudzemsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.
Aigars JirgensonsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV-1006, Latvia.
Kaspars TarsBiomedical Research and Study Centre, Ratsupites 1, Riga, LV-1067, Latvia.
Latvian Biomedical Research and Study Centre · LVLatvijas Organiskās Sintēzes Institūts · LV

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmepsin II (PMII) is one of the ten plasmepsins (PMs) identified in the genome of Plasmodium falciparum, the causative agent of the most severe and deadliest form of malaria. Owing to the emergence of P. falciparum strains that are resistant to current antimalarial agents such as chloroquine and sulfadoxine/pyrimethamine, there is a constant pressure to find new and lasting chemotherapeutic drug therapies. Previously, the crystal structure of PMII in complex with NU655, a potent antimalarial hydroxyethylamine-based inhibitor, and the design of new compounds based on it have been reported. In the current study, two of these newly designed hydroxyethylamine-based inhibitors, PG418 and PG394, were cocrystallized with PMII and their structures were solved, analyzed and compared with that of the PMII-NU655 complex. Structural analysis of the PMII-PG418 complex revealed that the flap loop can adopt a fully closed conformation, stabilized by interactions with the inhibitor, and a fully open conformation, causing an overall expansion in the active-site cavity, which in turn causes unstable binding of the inhibitor. PG418 also stabilizes the flexible loop Gln275-Met286 of another monomer in the asymmetric unit of PMII, which is disordered in the PMII-NU655 complex structure. The crystal structure of PMII in complex with the inhibitor PG418 demonstrates the conformational flexibility of the active-site cavity of the plasmepsins. The interactions of the different moieties in the P1' position of PG418 and PG394 with Thr217 have to be taken into account in the design of new potent plasmepsin inhibitors.

Indexed as

AntimalarialsAspartic Acid EndopeptidasesBenzamidesCatalytic DomainCathepsinsCrystallography, X-RayDimerizationEnzyme InhibitorsEthanolaminesHumansLigandsPlasmodium falciparumPropanolaminesProtein Structure, SecondaryProtozoan ProteinsAntimalarialsAspartic Acid EndopeptidasesBenzamidesCathepsinsEnzyme InhibitorsEthanolaminesLigandsPG394 compoundPG418 compoundplasmepsin IIPropanolaminesProtozoan ProteinshydroxyethylamineinhibitormalariaplasmepsinPlasmodium falciparum

Identifiers

PMID26625296
PMCPMC4666482
OpenAlexW2273211586

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.