Evidence map›Paper›PMID 26625196›Full record

ArticleOncotarget2016

Multiplatform molecular profiling identifies potentially targetable biomarkers in malignant phyllodes tumors of the breast.

Zoran Gatalica, Semir Vranic, Anatole Ghazalpour, Joanne Xiu, Idris Tolgay Ocal, John McGill, Ryan P Bender, Erin Discianno, Aaron Schlum, Souzan Sanati and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. IntragenicCancers · 2023
    Article
  6. Article
  7. Article
  8. Fibroepithelial tumours of the breast-a review.Virchows Archiv : an international journal of pathology · 2022
    Review
  9. Article
  10. Morphologic and genetic heterogeneity in breast fibroepithelial lesions-a comprehensive mapping study.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Zoran GatalicaCaris Life Sciences, Phoenix, AZ, United States of America.
Semir VranicDepartment of Pathology, University Clinical Center Sarajevo, Sarajevo, Bosnia and Herzegovina.
Anatole GhazalpourCaris Life Sciences, Phoenix, AZ, United States of America.
Joanne XiuCaris Life Sciences, Phoenix, AZ, United States of America.
Idris Tolgay OcalMayo Clinic, Scottsdale, AZ, United States of America.
John McGillMiraca Life Sciences, Phoenix, AZ, United States of America.
Ryan P BenderCaris Life Sciences, Phoenix, AZ, United States of America.
Erin DisciannoCaris Life Sciences, Phoenix, AZ, United States of America.
Aaron SchlumCaris Life Sciences, Phoenix, AZ, United States of America.
Souzan SanatiDivision of Anatomic and Molecular Pathology, Washington University School of Medicine, Saint Louis, MO, United States of America.
Juan PalazzoDepartment of Pathology, Anatomy, and Cell Biology, Jefferson Medical College, Philadelphia, PA, United States of America.
Sandeep ReddyCaris Life Sciences, Phoenix, AZ, United States of America.
Barbara PockajMayo Clinic, Scottsdale, AZ, United States of America.
Caris Life Sciences (United States) · USMayo Clinic in Arizona · USBioSurfaces (United States) · USJefferson College · USUniversity of Sarajevo · BAWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malignant phyllodes tumor is a rare breast malignancy with sarcomatous overgrowth and with limited effective treatment options for recurrent and metastatic cases. Recent clinical trials indicated a potential for anti-angiogenic, anti-EGFR and immunotherapeutic approaches for patients with sarcomas, which led us to investigate these and other targetable pathways in malignant phyllodes tumor of the breast. Thirty-six malignant phyllodes tumors (including 8 metastatic tumors with two cases having matched primary and metastatic tumors) were profiled using gene sequencing, gene copy number analysis, whole genome expression, and protein expression. Whole genome expression analysis demonstrated consistent over-expression of genes involved in angiogenesis including VEGFA, Angiopoietin-2, VCAM1, PDGFRA, and PTTG1. EGFR protein overexpression was observed in 26/27 (96%) of cases with amplification of the EGFR gene in 8/24 (33%) cases. Two EGFR mutations were identified including EGFRvIII and a presumed pathogenic V774M mutation, respectively. The most common pathogenic mutations included TP53 (50%) and PIK3CA (15%). Cases with matched primary and metastatic tumors harbored identical mutations in both sites (PIK3CA/KRAS and RB1 gene mutations, respectively). Tumor expression of PD-L1 immunoregulatory protein was observed in 3/22 (14%) of cases. Overexpression of molecular biomarkers of increased angiogenesis, EGFR and immune checkpoints provides novel targeted therapy options in malignant phyllodes tumors of the breast.

Indexed as

Gene Expression Regulation, NeoplasticAdolescentAdultAgedBiomarkers, TumorBreast NeoplasmsErbB ReceptorsFemaleGene Expression ProfilingHumansImmunohistochemistryMiddle AgedMutationNeovascularization, PathologicOligonucleotide Array Sequence AnalysisPhyllodes TumorBiomarkers, Tumorepidermal growth factor receptor VIIIErbB Receptorsbiomarkersbreastfibroepithelial tumorsmalignant phyllodes tumormolecular profiling

Identifiers

PMID26625196
PMCPMC4811491
OpenAlexW2188508791

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.