Evidence map›Paper›PMID 26623723›Full record

ArticleOncotarget2015

Aberrant modulation of the BRCA1 and G1/S cell cycle pathways in alcoholic hepatitis patients with Mallory Denk Bodies revealed by RNA sequencing.

Hui Liu, Ming Gong, Barbara A French, Guanghong Liao, Jun Li, Brittany Tillman, Samuel W French

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hui LiuDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Ming GongDepartment of Pediatrics, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Barbara A FrenchDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Guanghong LiaoDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Jun LiDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Brittany TillmanDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
Samuel W FrenchDepartment of Pathology, LABioMed at Harbor UCLA Medical Center, Torrance, CA, USA.
The Lundquist Institute · USHarbor–UCLA Medical Center · USUCLA Medical Center · US

Funding

PHS HHS AAU01021898-03PHS HHS P50-11999
6 · The paper itself

Abstract

Mallory-Denk Bodies (MDBs) are prevalent in various liver diseases including alcoholic hepatitis (AH) and are formed in mice livers by feeding DDC. Liver injury from alcohol administration causes balloon hepatocytes and MDB formation impeding liver regeneration. By comparing AH livers where MDBs had formed with normal liver transcriptomes obtained by RNA sequencing (RNA-Seq), there was significant upregulation of BRCA1-mediated signaling and G1/S cell cycle checkpoint pathways. The transcriptional architecture of differentially expressed genes from AH livers reflected step-wise transcriptional changes progressing to AH. Key molecules such as BRCA1, p15 and p21 were significantly upregulated both in AH livers and in the livers of the DDC re-fed mice model where MDBs had formed. The increase of G1/S cell cycle checkpoint inhibitors p15 and p21 results in cell cycle arrest and inhibition of liver regeneration, implying that p15 and p21 could be exploited for the identification of specific targets for the treatment of liver disease. Provided here for the first time is the RNA-Seq data that represents the fully annotated catalogue of the expression of mRNAs. The most prominent alterations observed were the changes in BRCA1-mediated signaling and G1/S cell cycle checkpoint pathways. These new findings expand previous and related knowledge in the search for gene changes that might be critical in the understanding of the underlying progression to the development of AH.

Indexed as

AnimalsBRCA1 ProteinCell CycleCell Cycle CheckpointsGene Expression ProfilingHepatitis, AlcoholicHigh-Throughput Nucleotide SequencingHumansImmunoblottingImmunohistochemistryMallory BodiesMicePolymerase Chain ReactionRNA, MessengerTranscriptomeBRCA1 ProteinRNA, Messengerballoon hepatocytecell cycle arrestliver diseasep15p21Pathology Section

Identifiers

PMID26623723
PMCPMC4767447
OpenAlexW2285692357

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.