Evidence map›Paper›PMID 26621740›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The introduction of RNA-DNA differences underlies interindividual variation in the human IL12RB1 mRNA repertoire.

Amy J Turner, Praful Aggarwal, Halli E Miller, Jill Waukau, John M Routes, Ulrich Broeckel, Richard T Robinson

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Amy J TurnerDepartment of Pediatrics, Section of Genomic Pediatrics and Children's Research Institute, The Medical College of Wisconsin, Milwaukee, WI 53226; Human and Molecular Genetics Center, The Medical College of Wisconsin, Milwaukee, WI 53226;
Praful AggarwalDepartment of Pediatrics, Section of Genomic Pediatrics and Children's Research Institute, The Medical College of Wisconsin, Milwaukee, WI 53226; Human and Molecular Genetics Center, The Medical College of Wisconsin, Milwaukee, WI 53226;
Halli E MillerDepartment of Microbiology and Molecular Genetics, The Medical College of Wisconsin, Milwaukee, WI 53226;
Jill WaukauDepartment of Pediatrics, Section of Asthma, Allergy and Clinical Immunology, The Medical College of Wisconsin, Milwaukee, WI 53226.
John M RoutesDepartment of Pediatrics, Section of Asthma, Allergy and Clinical Immunology, The Medical College of Wisconsin, Milwaukee, WI 53226.
Ulrich BroeckelDepartment of Pediatrics, Section of Genomic Pediatrics and Children's Research Institute, The Medical College of Wisconsin, Milwaukee, WI 53226; Human and Molecular Genetics Center, The Medical College of Wisconsin, Milwaukee, WI 53226; rrobinson@mcw.edu ubroeckel@mcw.edu.
Richard T RobinsonDepartment of Microbiology and Molecular Genetics, The Medical College of Wisconsin, Milwaukee, WI 53226; rrobinson@mcw.edu ubroeckel@mcw.edu.
Medical College of Wisconsin · USChildren's Hospital of Wisconsin · US

Funding

M.tuberculosis-induced Alternative Processing of IL12RB1 mRNAR21AI099661 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI MCNALLY, MARK T, ROBINSON, RICHARD · 2013 to 2014
$421k
NIAID NIH HHS R21 AI099661NIAID NIH HHS R21AI099661
6 · The paper itself

Abstract

Human interleukin 12 and interleukin 23 (IL12/23) influence susceptibility or resistance to multiple diseases. However, the reasons underlying individual differences in IL12/23 sensitivity remain poorly understood. Here we report that in human peripheral blood mononuclear cells (PBMCs) and inflamed lungs, the majority of interleukin-12 receptor β1 (IL12RB1) mRNAs contain a number of RNA-DNA differences (RDDs) that concentrate in sequences essential to IL12Rβ1's binding of IL12p40, the protein subunit common to both IL-12 and IL-23. IL12RB1 RDDs comprise multiple RDD types and are detectable by next-generation sequencing and classic Sanger sequencing. As a consequence of these RDDs, the resulting IL12Rβ1 proteins have an altered amino acid sequence that could not be predicted on the basis of genomic DNA sequencing alone. Importantly, the introduction of RDDs into IL12RB1 mRNAs negatively regulates IL12Rβ1's binding of IL12p40 and is sensitive to activation. Collectively, these results suggest that the introduction of RDDs into an individual's IL12RB1 mRNA repertoire is a novel determinant of IL12/23 sensitivity.

Indexed as

AdultBase SequenceDNAGene Expression RegulationHumansInterleukin-12LungModels, BiologicalMolecular Sequence DataPhytohemagglutininsPneumoniaProtein BindingReceptors, Interleukin-12Recombinant ProteinsRNARNA, MessengerDNAIL12RB1 protein, humanInterleukin-12PhytohemagglutininsReceptors, Interleukin-12Recombinant ProteinsRNARNA, MessengerIL-12IL12RB1IL-23RDDRNA

Identifiers

PMID26621740
PMCPMC4687591
OpenAlexW2300325496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.