Evidence map›Paper›PMID 26621469›Full record

ReviewAdvances in experimental medicine and biology2015

Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens.

Seesandra Venkatappa Rajagopala

Abstract readReview
In one paragraph

Review in Advances in experimental medicine and biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Informatic Analysis of Sequence Data from Batch Yeast 2-Hybrid Screens.Journal of visualized experiments : JoVE · 2018
    Article
  8. A Yeast 2-Hybrid Screen in Batch to Compare Protein Interactions.Journal of visualized experiments : JoVE · 2018
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Seesandra Venkatappa RajagopalaJ. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD, 20850, USA. rajgsv@gmail.com.

Funding

A Protein-Protein Interaction Map of Escherichia coliR01GM079710 · NIGMS · J. CRAIG VENTER INSTITUTE, INC. · PI RAJAGOPALA, SEESANDRA VENKATAPPA · 2008 to 2011
$2.5M
NIGMS NIH HHS R01 GM079710NIGMS NIH HHS R01GM79710
6 · The paper itself

Abstract

The yeast two-hybrid system (Y2H) is a powerful method to identify binary protein-protein interactions in vivo. Here we describe Y2H screening strategies that use defined libraries of open reading frames (ORFs) and cDNA libraries. The array-based Y2H system is well suited for interactome studies of small genomes with an existing ORFeome clones preferentially in a recombination based cloning system. For large genomes, pooled library screening followed by Y2H pairwise retests may be more efficient in terms of time and resources, but multiple sampling is necessary to ensure comprehensive screening. While the Y2H false positives can be efficiently reduced by using built-in controls, retesting, and evaluation of background activation; implementing the multiple variants of the Y2H vector systems is essential to reduce the false negatives and ensure comprehensive coverage of an interactome.

Indexed as

Protein Interaction MappingTwo-Hybrid System TechniquesHigh-Throughput Nucleotide SequencingOpen Reading FramesProteomeSaccharomyces cerevisiaeProteomePooled library screeningProtein–protein interactionsTwo-hybrid arrayYeast two-hybrid system

Identifiers

PMID26621469
PMCPMC7120425

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.