Evidence map›Paper›PMID 26621075›Full record

ArticleScientific reports2015

Exploring molecular variation in Schistosoma japonicum in China.

Neil D Young, Kok-Gan Chan, Pasi K Korhonen, Teik Min Chong, Robson Ee, Namitha Mohandas, Anson V Koehler, Yan-Lue Lim, Andreas Hofmann, Aaron R Jex and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 47 citations in OpenAlex.

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  8. Persistence ofThe American journal of tropical medicine and hygiene · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 5 countries.

Neil D YoungThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Kok-Gan ChanISB (Genetics and Molecular Biology), Faculty of Science, The University of Malaya, Kuala Lumpur 50603, Malaysia.
Pasi K KorhonenThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Teik Min ChongISB (Genetics and Molecular Biology), Faculty of Science, The University of Malaya, Kuala Lumpur 50603, Malaysia.
Robson EeISB (Genetics and Molecular Biology), Faculty of Science, The University of Malaya, Kuala Lumpur 50603, Malaysia.
Namitha MohandasThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Anson V KoehlerThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Yan-Lue LimISB (Genetics and Molecular Biology), Faculty of Science, The University of Malaya, Kuala Lumpur 50603, Malaysia.
Andreas HofmannThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Aaron R JexThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Baozhen QianThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
Neil B ChiltonDepartment of Biology, University of Saskatchewan, Saskatoon S7N 5E2, Canada.
Geoffrey N GobertQIMR Berghofer Medical Research Institute, Brisbane, Queensland 4006, Australia.
Donald P McManusQIMR Berghofer Medical Research Institute, Brisbane, Queensland 4006, Australia.
Patrick TanGenome Institute of Singapore, 60 Biopolis Street, Singapore 138672, Republic of Singapore.
Bonnie L WebsterThe Natural History Museum, London SW7 5BD, United Kingdom.
David RollinsonThe Natural History Museum, London SW7 5BD, United Kingdom.
Robin B GasserThe University of Melbourne, Pathogen Genomics and Genetics Program, Parkville, Victoria 3010, Australia.
University of Melbourne · AUUniversity of Malaya · MYMelbourne Genomics Health Alliance · AUNatural History Museum · GBQIMR Berghofer Medical Research Institute · AUGenome Institute of Singapore · SGUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Schistosomiasis is a neglected tropical disease that affects more than 200 million people worldwide. The main disease-causing agents, Schistosoma japonicum, S. mansoni and S. haematobium, are blood flukes that have complex life cycles involving a snail intermediate host. In Asia, S. japonicum causes hepatointestinal disease (schistosomiasis japonica) and is challenging to control due to a broad distribution of its snail hosts and range of animal reservoir hosts. In China, extensive efforts have been underway to control this parasite, but genetic variability in S. japonicum populations could represent an obstacle to eliminating schistosomiasis japonica. Although a draft genome sequence is available for S. japonicum, there has been no previous study of molecular variation in this parasite on a genome-wide scale. In this study, we conducted the first deep genomic exploration of seven S. japonicum populations from mainland China, constructed phylogenies using mitochondrial and nuclear genomic data sets, and established considerable variation between some of the populations in genes inferred to be linked to key cellular processes and/or pathogen-host interactions. Based on the findings from this study, we propose that verifying intraspecific conservation in vaccine or drug target candidates is an important first step toward developing effective vaccines and chemotherapies against schistosomiasis.

Indexed as

Genetic VariationGenome, HelminthAnimalsChinaFemaleGenome-Wide Association StudyHumansMaleSchistosoma japonicumSchistosomiasis japonica

Identifiers

PMID26621075
PMCPMC4664899
OpenAlexW2415059589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.