Evidence map›Paper›PMID 26620652›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2016

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe.

L Marije Hofstra, Nicolas Sauvageot, Jan Albert, Ivailo Alexiev, Federico Garcia, Daniel Struck, David A M C Van de Vijver, Birgitta Åsjö, Danail Beshkov, Suzie Coughlan and 320 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04894357 (Phenotypic and Site Directed Mutagenesis Analysis on the Impact of V106I in HIV-1 Reverse Transcriptase on Resistance to Doravirine), which is not on this map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04894357 unknown statusnot on this mapstarted 2021, after this paper: background citation

Phenotypic and Site Directed Mutagenesis Analysis on the Impact of V106I in HIV-1 Reverse Transcriptase on Resistance to Doravirine

TypeobservationalSponsorFundación Pública Andaluza para la Investigación Biomédica Andalucía OrientalRan2021 to 2022Enrolled50ConditionsHIV-1-infectionArmsPhenotypic resistance measure
3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 158 citations in OpenAlex.

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  13. 2022 update of the drug resistance mutations in HIV-1.Topics in antiviral medicine · 2022
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

330 authors at 20 institutions in 23 countries.

L Marije HofstraLuxembourg Institute of Health, Luxembourg.
Nicolas SauvageotLuxembourgInstitute of Health, Luxembourg.
Jan AlbertKarolinska Institute, Solna.
Ivailo AlexievNational Center of Infectious and Parasitic Diseases, Sofia, Bulgaria.
Federico GarciaComplejo Hospitalario Universitario de Granada, Instituto de Investigación IBS Granada; on behalf of Cohorte de Adultos de la Red de Investigación en SIDA, Spain.
Daniel StruckLuxembourgInstitute of Health, Luxembourg.
David A M C Van de VijverErasmus MC, University Medical Center, Rotterdam, The Netherlands.
Birgitta ÅsjöUniversity of Bergen, Norway.
Danail BeshkovNational Center of Infectious and Parasitic Diseases, Sofia, Bulgaria.
Suzie CoughlanUniversity College Dublin, Ireland.
Diane DescampsAP-HP Groupe hospitalier Bichat-Claude Bernard, IAME INSERM UMR 1137, Université Paris Diderot Sorbonne Paris Cité, Paris, France.
Algirdas GriskeviciusLithuanian AIDS Center, Vilnius, Lithuania.
Osamah HamoudaRobert Koch Institute, Berlin, Germany.
Andrzej HorbanHospital of Infectious Diseases, Warsaw, Poland.
Marjo Van KasterenSt Elisabeth Hospital, Tilburg, The Netherlands.
Tatjana KolupajevaInfectiology Center of Latvia, Riga.
Leondios G KostrikisUniversity of Cyprus, Nicosia.
Kirsi LiitsolaDepartment of Infectious Diseases, National Institute for Health and Welfare, Helsinki, Finland.
Marek LinkaNational Reference Laboratory for HIV/AIDS, National Institute of Public Health, Prague, Czech Republic.
Orna MorNational HIV Reference Laboratory, Chaim Sheba Medical Center, Tel-Hashomer, Israel.
Claus NielsenStatens Serum Institut, Copenhagen, Denmark.
Dan OteleaNational Institute for Infectious Diseases "Prof. dr. Matei Bals", Bucharest, Romania.
Dimitrios ParaskevisNational Retrovirus Reference Center, University of Athens, Greece.
Roger ParedesIrsiCaixa Foundation, Badalona, Spain.
Mario PoljakFaculty of Medicine, Slovenian HIV/AIDS Reference Centre, University of Ljubljana, Slovenia.
Elisabeth Puchhammer-StöcklMedical University Vienna, Austria.
Anders SönnerborgKarolinska Institute, Solna.
Danica StanekováSlovak Medical University, Bratislava, Slovakia.
Maja StanojevicFaculty of Medicine, University of Belgrade, Serbia.
Kristel Van LaethemRega Institute for Medical Research, KU Leuven, Belgium.
Maurizio ZazziUniversity of Siena, Italy.
Snjezana Zidovec LepejUniversity Hospital for Infectious Diseases "Dr. Fran Mihaljevic", Zagreb, Croatia.
Charles A B BoucherErasmus MC, University Medical Center, Rotterdam, The Netherlands.
Jean-Claude SchmitLuxembourgInstitute of Health, Luxembourg.
Annemarie M J WensingDepartment of Virology, University Medical Center Utrecht, The Netherlands.
SPREAD Program
E Puchhammer-Stockl
M Sarcletti
B Schmied
M Geit
G Balluch
A-M Vandamme
J Vercauteren
I Derdelinckx
A Sasse
M Bogaert
H Ceunen
A De Roo
S De Wit
F Echahidi
K Fransen
J-C Goffard
P Goubau
E Goudeseune
J-C Yombi
P Lacor
C Liesnard
M Moutschen
D Pierard
R Rens
Y Schrooten
D Vaira
L P R Vandekerckhove
A Van den Heuvel
B Van Der Gucht
M Van Ranst
E Van Wijngaerden
B Vandercam
M Vekemans
C Verhofstede
N Clumeck
K Van Laethem
D Beshkov
I Alexiev
S Zidovec Lepej
J Begovac
L Kostrikis
I Demetriades
I Kousiappa
V Demetriou
J Hezka
M Linka
M Maly
L Machala
C Nielsen
L B Jørgensen
J Gerstoft
L Mathiesen
C Pedersen
H Nielsen
A Laursen
B Kvinesdal
K Liitsola
M Ristola
J Suni
J Sutinen
D Descamps
L Assoumou
G Castor
M Grude
P Flandre
A Storto
O Hamouda
C Kücherer
T Berg
P Braun
G Poggensee
M Däumer
J Eberle
H Heiken
R Kaiser
H Knechten
K Korn
H Müller
S Neifer
B Schmidt
H Walter
B Gunsenheimer-Bartmeyer
T Harrer
D Paraskevis
A Hatzakis
A Zavitsanou
A Vassilakis
M Lazanas
M Chini
A Lioni
V Sakka
S Kourkounti
V Paparizos
A Antoniadou
A Papadopoulos
G Poulakou
I Katsarolis
K Protopapas
G Chryssos
S Drimis
P Gargalianos
G Xylomenos
G Lourida
M Psichogiou
G L Daikos
N V Sipsas
A Kontos
M N Gamaletsou
G Koratzanis
H Sambatakou
H Mariolis
A Skoutelis
V Papastamopoulos
O Georgiou
P Panagopoulos
E Maltezos
S Coughlan
C De Gascun
C Byrne
M Duffy
C Bergin
D Reidy
G Farrell
J Lambert
E O'Connor
A Rochford
J Low
P Coakely
S O'Dea
W Hall
O Mor
I Levi
D Chemtob
Z Grossman
M Zazzi
A de Luca
C Balotta
C Riva
C Mussini
I Caramma
A Capetti
M C Colombo
C Rossi
F Prati
F Tramuto
F Vitale
M Ciccozzi
G Angarano
G Rezza
T Kolupajeva
O Vasins
A Griskevicius
V Lipnickiene
J C Schmit
D Struck
N Sauvageot
R Hemmer
V Arendt
C Michaux
T Staub
C Sequin-Devaux
A M J Wensing
C A B Boucher
D A M C van de Vijver
A van Kessel
P H M van Bentum
K Brinkman
B J Connell
M E van der Ende
I M Hoepelman
M van Kasteren
M Kuipers
N Langebeek
C Richter
R M W J Santegoets
L Schrijnders-Gudde
R Schuurman
B J M van de Ven
B Åsjö
A-M Bakken Kran
V Ormaasen
P Aavitsland
A Horban
J J Stanczak
G P Stanczak
E Firlag-Burkacka
A Wiercinska-Drapalo
E Jablonowska
E Maolepsza
M Leszczyszyn-Pynka
W Szata
R Camacho
C Palma
F Borges
T Paixão
V Duque
F Araújo
D Otelea
S Paraschiv
A M Tudor
R Cernat
C Chiriac
F Dumitrescu
L J Prisecariu
M Stanojevic
Dj Jevtovic
D Salemovic
D Stanekova
M Habekova
Z Chabadová
T Drobkova
P Bukovinova
A Shunnar
P Truska
M Poljak
M Lunar
D Babic
J Tomazic
L Vidmar
T Vovko
P Karner
F Garcia
R Paredes
S Monge
S Moreno
J Del Amo
V Asensi
J L Sirvent
C de Mendoza
R Delgado
F Gutiérrez
J Berenguer
S Garcia-Bujalance
N Stella
I de Los Santos
J R Blanco
D Dalmau
M Rivero
F Segura
M J Pérez Elías
M Alvarez
N Chueca
C Rodríguez-Martín
C Vidal
J C Palomares
I Viciana
P Viciana
J Cordoba
A Aguilera
P Domingo
M J Galindo
C Miralles
M A Del Pozo
E Ribera
J A Iribarren
L Ruiz
J de la Torre
F Vidal
B Clotet
J Albert
A Heidarian
K Aperia-Peipke
M Axelsson
M Mild
A Karlsson
A Sönnerborg
A Thalme
L Navér
G Bratt
A Karlsson
A Blaxhult
M Gisslén
B Svennerholm
I Bergbrant
P Björkman
C Säll
Å Mellgren
A Lindholm
N Kuylenstierna
R Montelius
F Azimi
B Johansson
M Carlsson
E Johansson
B Ljungberg
H Ekvall
A Strand
S Mäkitalo
S Öberg
P Holmblad
M Höfer
H Holmberg
P Josefson
U Ryding
Luxembourg Institute of Health · LUErasmus MC · NLKarolinska Institutet · SENational Center of Infectious and Parasitic Diseases · BGComplejo Hospitalario Universitario de Granada · ESElisabeth-TweeSteden Ziekenhuis · NLFinnish Institute for Health and Welfare · FIIrsiCaixa · ESKU Leuven · BEMedical University of Vienna · ATNational and Kapodistrian University of Athens · GRNational Institute of Public Health · CZNational Institute of Research and Development for Biological Sciences · RORobert Koch Institute · DESheba Medical Center · ILSlovak Medical University · SKStatens Serum Institut · DKUniversité Claude Bernard Lyon 1 · FRUniversity College Dublin · IEUniversity Hospital for Infectious Diseases "Dr Fran Mihaljevic" · HR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNumerous studies have shown that baseline drug resistance patterns may influence the outcome of antiretroviral therapy. Therefore, guidelines recommend drug resistance testing to guide the choice of initial regimen. In addition to optimizing individual patient management, these baseline resistance data enable transmitted drug resistance (TDR) to be surveyed for public health purposes. The SPREAD program systematically collects data to gain insight into TDR occurring in Europe since 2001.

methodsDemographic, clinical, and virological data from 4140 antiretroviral-naive human immunodeficiency virus (HIV)-infected individuals from 26 countries who were newly diagnosed between 2008 and 2010 were analyzed. Evidence of TDR was defined using the WHO list for surveillance of drug resistance mutations. Prevalence of TDR was assessed over time by comparing the results to SPREAD data from 2002 to 2007. Baseline susceptibility to antiretroviral drugs was predicted using the Stanford HIVdb program version 7.0.

resultsThe overall prevalence of TDR did not change significantly over time and was 8.3% (95% confidence interval, 7.2%-9.5%) in 2008-2010. The most frequent indicators of TDR were nucleoside reverse transcriptase inhibitor (NRTI) mutations (4.5%), followed by nonnucleoside reverse transcriptase inhibitor (NNRTI) mutations (2.9%) and protease inhibitor mutations (2.0%). Baseline mutations were most predictive of reduced susceptibility to initial NNRTI-based regimens: 4.5% and 6.5% of patient isolates were predicted to have resistance to regimens containing efavirenz or rilpivirine, respectively, independent of current NRTI backbones.

conclusionsAlthough TDR was highest for NRTIs, the impact of baseline drug resistance patterns on susceptibility was largest for NNRTIs. The prevalence of TDR assessed by epidemiological surveys does not clearly indicate to what degree susceptibility to different drug classes is affected.

Indexed as

AdultAnti-HIV AgentsDrug Resistance, ViralEuropeFemaleHIV-1HIV InfectionsHIV Protease InhibitorsHumansMaleMicrobial Sensitivity TestsMiddle AgedMutationPrevalenceReverse Transcriptase InhibitorsAnti-HIV AgentsHIV Protease InhibitorsReverse Transcriptase Inhibitorsantiretroviral therapydrug resistanceEuropeHIV-1transmission

Identifiers

PMID26620652
PMCPMC4741360
OpenAlexW2205249602

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.