Evidence map›Paper›PMID 26619250›Full record

ArticleNature chemical biology2016

Mechanism of hydrogen activation by [NiFe] hydrogenases.

Rhiannon M Evans, Emily J Brooke, Sara A M Wehlin, Elena Nomerotskaia, Frank Sargent, Stephen B Carr, Simon E V Phillips, Fraser A Armstrong

Abstract read
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In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 126 citations in OpenAlex.

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  9. Understanding the role of negative charge in the scaffold of an artificial enzyme for COJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
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  13. Enzymatic and Bioinspired Systems for Hydrogen Production.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rhiannon M EvansDepartment of Chemistry, University of Oxford, Oxford, UK.
Emily J BrookeDepartment of Chemistry, University of Oxford, Oxford, UK.
Sara A M WehlinDepartment of Chemistry, University of Oxford, Oxford, UK.
Elena NomerotskaiaDepartment of Chemistry, University of Oxford, Oxford, UK.
Frank SargentDivision of Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-6841-3624
Stephen B CarrResearch Complex at Harwell, Rutherford Appleton Laboratory, Harwell Oxford, Didcot, UK.
Simon E V PhillipsResearch Complex at Harwell, Rutherford Appleton Laboratory, Harwell Oxford, Didcot, UK.
Fraser A ArmstrongDepartment of Chemistry, University of Oxford, Oxford, UK.
University of Oxford · GBRutherford Appleton Laboratory · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I022309-1Biotechnology and Biological Sciences Research Council BB/L008521/1Biotechnology and Biological Sciences Research Council BB/L009722/1Medical Research Council MC_EX_G0901251
6 · The paper itself

Abstract

The active site of [NiFe] hydrogenases contains a strictly conserved arginine that suspends a guanidine nitrogen atom <4.5 Å above the nickel and iron atoms. The guanidine headgroup interacts with the side chains of two conserved aspartic acid residues to complete an outer-shell canopy that has thus far proved intractable to investigation by site-directed mutagenesis. Using hydrogenase-1 from Escherichia coli, the strictly conserved residues R509 and D574 have been replaced by lysine (R509K) and asparagine (D574N) and the highly conserved D118 has been replaced by alanine (D118A) or asparagine (D118N/D574N). Each enzyme variant is stable, and their [(RS)2Niμ(SR)2Fe(CO)(CN)2] inner coordination shells are virtually unchanged. The R509K variant had >100-fold lower activity than native enzyme. Conversely, the variants D574N, D118A and D118N/D574N, in which the position of the guanidine headgroup is retained, showed 83%, 26% and 20% activity, respectively. The special kinetic requirement for R509 implicates the suspended guanidine group as the general base in H2 activation by [NiFe] hydrogenases.

Indexed as

AlanineAmino Acid SubstitutionAsparagineCrystallography, X-RayEscherichia coli ProteinsGuanidineHydrogenHydrogenaseIronLysineMutationNickelProtein ConformationAlanineAsparagineEscherichia coli ProteinsGuanidineHydrogenHydrogenasehydrogenase 1, E coliIronLysineNickel

Identifiers

PMID26619250
OpenAlexW2220105988

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.