Evidence map›Paper›PMID 26618343›Full record

ArticleNature genetics2016

Integrated genomic characterization of IDH1-mutant glioma malignant progression.

Hanwen Bai, Akdes Serin Harmancı, E Zeynep Erson-Omay, Jie Li, Süleyman Coşkun, Matthias Simon, Boris Krischek, Koray Özduman, S Bülent Omay, Eric A Sorensen and 24 more

Abstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 195 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
195citing papers in PubMed, 4 pooled it
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

195 citing papers in PubMed, 4 syntheses or guidelines pooled it, 346 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Molecular Biomarker Testing for the Diagnosis of Diffuse Gliomas.Archives of pathology & laboratory medicine · 2022
    Guideline
  4. Pooled it
  5. Trial
  6. Trial
  7. Article
  8. Article
  9. Review
  10. Article
  11. Current and emerging therapies in IDH-mutant glioma.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

135 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 7 institutions in 3 countries.

Hanwen BaiDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Akdes Serin HarmancıProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
E Zeynep Erson-OmayProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Jie LiDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Süleyman CoşkunProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Matthias SimonDepartment of Neurosurgery, University of Bonn Medical School, Bonn, Germany.
Boris KrischekDepartment of General Neurosurgery, University Hospital of Cologne, Cologne, Germany.
Koray ÖzdumanDepartment of Neurosurgery, Acıbadem University School of Medicine, Istanbul, Turkey.
S Bülent OmayProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Eric A SorensenTranslational Medicine, Biomarkers, Gilead Sciences, Inc., Foster City, California, USA.
Şevin TurcanHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Mehmet BakırcığluDepartment of Neurosurgery, Acıbadem University School of Medicine, Istanbul, Turkey.
Geneive Carrión-GrantProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Phillip B MurrayDepartment of Pharmacology, Yale School of Medicine, New Haven, Connecticut, USA.
Victoria E ClarkDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
A Gulhan Ercan-SencicekProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
James KnightDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Leman SencarProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Selin AltınokProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Leon D KaulenProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Burcu GülezProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Marco TimmerDepartment of General Neurosurgery, University Hospital of Cologne, Cologne, Germany.
Johannes SchrammDepartment of Neurosurgery, University of Bonn Medical School, Bonn, Germany.
Ketu Mishra-GorurDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Octavian HenegariuDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Jennifer MoliternoProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Angeliki LouviDepartment of Neurosurgery, Yale School of Medicine, New Haven, Connecticut, USA.
Timothy A ChanHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Stacey L TannheimerTranslational Medicine, Biomarkers, Gilead Sciences, Inc., Foster City, California, USA.
M Necmettin PamirDepartment of Neurosurgery, Acıbadem University School of Medicine, Istanbul, Turkey.
Alexander O VortmeyerDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Kaya BilguvarDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Katsuhito YasunoProgram in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.ORCID http://orcid.org/0000-0002-3606-532X
Murat GünelDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, USA.
Yale Cancer Center · USYale University · USAcıbadem University · TRGilead Sciences (United States) · USMemorial Sloan Kettering Cancer Center · USUniversity Hospital Cologne · DEUniversity of Bonn · DE

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
Elucidating and targeting the molecular foundations of IDH Mutant gliomaR01CA177828 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CHAN, TIMOTHY AN-THY, THOMPSON, CRAIG B · 2015 to 2019
$2.8M
NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA177828NICHD NIH HHS T32 HD007149NIGMS NIH HHS T32 GM007205
6 · The paper itself

Abstract

Gliomas represent approximately 30% of all central nervous system tumors and 80% of malignant brain tumors. To understand the molecular mechanisms underlying the malignant progression of low-grade gliomas with mutations in IDH1 (encoding isocitrate dehydrogenase 1), we studied paired tumor samples from 41 patients, comparing higher-grade, progressed samples to their lower-grade counterparts. Integrated genomic analyses, including whole-exome sequencing and copy number, gene expression and DNA methylation profiling, demonstrated nonlinear clonal expansion of the original tumors and identified oncogenic pathways driving progression. These include activation of the MYC and RTK-RAS-PI3K pathways and upregulation of the FOXM1- and E2F2-mediated cell cycle transitions, as well as epigenetic silencing of developmental transcription factor genes bound by Polycomb repressive complex 2 in human embryonic stem cells. Our results not only provide mechanistic insight into the genetic and epigenetic mechanisms driving glioma progression but also identify inhibition of the bromodomain and extraterminal (BET) family as a potential therapeutic approach.

Indexed as

MutationCentral Nervous System NeoplasmsDNA MethylationEmbryonic Stem CellsForkhead Box Protein M1Forkhead Transcription FactorsGene DosageGene Expression Regulation, NeoplasticGenes, mycGliomaHumansIsocitrate DehydrogenasePhosphatidylinositol 3-KinasesReceptor, Notch1Forkhead Box Protein M1Forkhead Transcription FactorsFOXM1 protein, humanIDH1 protein, humanIsocitrate DehydrogenaseNOTCH1 protein, humanPhosphatidylinositol 3-KinasesReceptor, Notch1

Identifiers

PMID26618343
PMCPMC4829945
OpenAlexW2184483246

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.