Evidence map›Paper›PMID 26618092›Full record

ArticlePeerJ2015

Unbiased high-throughput characterization of mussel transcriptomic responses to sublethal concentrations of the biotoxin okadaic acid.

Victoria Suarez-Ulloa, Juan Fernandez-Tajes, Vanessa Aguiar-Pulido, M Veronica Prego-Faraldo, Fernanda Florez-Barros, Alexia Sexto-Iglesias, Josefina Mendez, Jose M Eirin-Lopez

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. From the raw bar to the bench: Bivalves as models for human health.Developmental and comparative immunology · 2019
    Review
  6. Accumulation ofToxins · 2018
    Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Victoria Suarez-UlloaChromatin Structure and Evolution Group (Chromevol), Department of Biological Sciences, Florida International University , Miami, FL , United States of America.
Juan Fernandez-TajesMcCarthy Group, Wellcome Trust Center for Human Genetics, University of Oxford , Oxford , United Kingdom.
Vanessa Aguiar-PulidoBioinformatics Research Group (BioRG), School of Computing & Information Sciences, Florida International University , Miami, FL , United States of America.
M Veronica Prego-FaraldoChromatin Structure and Evolution Group (Chromevol), Department of Biological Sciences, Florida International University , Miami, FL , United States of America ; Xenomar Group, Department of Cellular and Molecular Biology, University of A Coruña , A Coruña , Spain.
Fernanda Florez-BarrosCentre for Nephrology, Royal Free Hospital, University College London , London , United Kingdom.
Alexia Sexto-IglesiasXenomar Group, Department of Cellular and Molecular Biology, University of A Coruña , A Coruña , Spain.
Josefina MendezXenomar Group, Department of Cellular and Molecular Biology, University of A Coruña , A Coruña , Spain.
Jose M Eirin-LopezChromatin Structure and Evolution Group (Chromevol), Department of Biological Sciences, Florida International University , Miami, FL , United States of America.
Florida International University · USUniversidade da Coruña · ESCentre for Human Genetics · GBThe Royal Free Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background. Harmful Algal Blooms (HABs) responsible for Diarrhetic Shellfish Poisoning (DSP) represent a major threat for human consumers of shellfish. The biotoxin Okadaic Acid (OA), a well-known phosphatase inhibitor and tumor promoter, is the primary cause of acute DSP intoxications. Although several studies have described the molecular effects of high OA concentrations on sentinel organisms (e.g., bivalve molluscs), the effect of prolonged exposures to low (sublethal) OA concentrations is still unknown. In order to fill this gap, this work combines Next-Generation sequencing and custom-made microarray technologies to develop an unbiased characterization of the transcriptomic response of mussels during early stages of a DSP bloom. Methods. Mussel specimens were exposed to a HAB episode simulating an early stage DSP bloom (200 cells/L of the dinoflagellate Prorocentrum lima for 24 h). The unbiased characterization of the transcriptomic responses triggered by OA was carried out using two complementary methods of cDNA library preparation: normalized and Suppression Subtractive Hybridization (SSH). Libraries were sequenced and read datasets were mapped to Gene Ontology and KEGG databases. A custom-made oligonucleotide microarray was developed based on these data, completing the expression analysis of digestive gland and gill tissues. Results. Our findings show that exposure to sublethal concentrations of OA is enough to induce gene expression modifications in the mussel Mytilus. Transcriptomic analyses revealed an increase in proteasomal activity, molecular transport, cell cycle regulation, energy production and immune activity in mussels. Oppositely, a number of transcripts hypothesized to be responsive to OA (notably the Serine/Threonine phosphatases PP1 and PP2A) failed to show substantial modifications. Both digestive gland and gill tissues responded similarly to OA, although expression modifications were more dramatic in the former, supporting the choice of this tissue for future biomonitoring studies. Discussion. Exposure to OA concentrations within legal limits for safe consumption of shellfish is enough to disrupt important cellular processes in mussels, eliciting sharp transcriptional changes as a result. By combining the study of cDNA libraries and a custom-made OA-specific microarray, our work provides a comprehensive characterization of the OA-specific transcriptome, improving the accuracy of the analysis of expresion profiles compared to single-replicated RNA-seq methods. The combination of our data with related studies helps understanding the molecular mechanisms underlying molecular responses to DSP episodes in marine organisms, providing useful information to develop a new generation of tools for the monitoring of OA pollution.

Indexed as

BiomonitoringDiarrhetic shellfish poisoningHarmful algal bloomsMarine pollutionMicroarrayOkadaic acidTranscriptomics

Identifiers

PMID26618092
PMCPMC4655091
OpenAlexW2175024036

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.