Evidence map›Paper›PMID 26617766›Full record

ArticleInternational journal of clinical and experimental pathology2015

Quantitative real-time polymerase chain reaction is an alternative method for the detection of HER-2 amplification in formalin-fixed paraffin-embedded breast cancer samples.

Tianjie Pu, Peng Guo, Yan Qiu, Shinan Chen, Libo Yang, Linyong Sun, Feng Ye, Hong Bu

Abstract readComparative Study
In one paragraph

Article in International journal of clinical and experimental pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tianjie PuLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China ; Department of Pathology, West China Hospital, Sichuan University Sichuan, China.
Peng GuoLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China.
Yan QiuLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China ; Department of Pathology, West China Hospital, Sichuan University Sichuan, China.
Shinan ChenLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China.
Libo YangLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China ; Department of Pathology, West China Hospital, Sichuan University Sichuan, China.
Linyong SunDepartment of Pathology, West China Hospital, Sichuan University Sichuan, China.
Feng YeLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China.
Hong BuLaboratory of Pathology, West China Hospital, Sichuan University Sichuan, China ; Department of Pathology, West China Hospital, Sichuan University Sichuan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescent in situ hybridization (FISH) and immunohistochemistry (IHC) are the most common methods that are used to quantify HER-2 gene and protein levels, respectively, in human breast cancer. However, due to bad sample quality, some samples are unable to be subjected to a FISH assay. We evaluated 71 formalin-fixed paraffin-embedded (FFPE) breast carcinoma specimens by quantitative real-time polymerase chain reaction (qPCR), IHC, and FISH. We also performed qPCR and FISH assays on delayed formalin-fixed (DDF) samples. The qPCR results were in complete concordance with the results of IHC and FISH. In regards to the DDF samples, the HER-2 fluorescent signal seemed decayed compared with that of the DDF samples after 1 h. However, the qPCR method still works well up to 12 hours. Our results indicated that qPCR was obviously superior to FISH in cases that were not fixed in a reasonable amount of time. However, qPCR can be an alternative method by which to perform HER2 amplification assays in breast cancer.

Indexed as

FixativesFormaldehydeGene AmplificationParaffin EmbeddingReal-Time Polymerase Chain ReactionBiomarkers, TumorBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesFemaleGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticHumansImmunohistochemistryIn Situ Hybridization, FluorescenceMCF-7 CellsPredictive Value of TestsBiomarkers, TumorERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesFixativesFormaldehydebreast neoplasmdelayed formalin-fixedFISHHER-2 copy number variationIHCquantitative real-time polymerase chain reaction

Identifiers

PMID26617766
PMCPMC4637581

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.