Evidence map›Paper›PMID 26617401›Full record

ArticleScientific reports2015

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.

Jose J De Vega, Sarah Ayling, Matthew Hegarty, Dave Kudrna, Jose L Goicoechea, Åshild Ergon, Odd A Rognli, Charlotte Jones, Martin Swain, Rene Geurts and 12 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
17.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 171 citations in OpenAlex.

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  10. Investigating the Origin and Evolution of PolyploidPlants (Basel, Switzerland) · 2023
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  14. An improved reference genome forFrontiers in plant science · 2023
    Article
  15. Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  16. Article
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  20. Transcriptome Analysis of Air Space-Type Variegation Formation inInternational journal of molecular sciences · 2022
    Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 5 countries.

Jose J De VegaThe Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Sarah AylingThe Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Matthew HegartyInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Dave KudrnaArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson AZ 85721, USA.
Jose L GoicoecheaArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson AZ 85721, USA.
Åshild ErgonNorwegian University of Life Sciences, Department of Plant Sciences, N-1432, Ås, Norway.
Odd A RognliNorwegian University of Life Sciences, Department of Plant Sciences, N-1432, Ås, Norway.
Charlotte JonesInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Martin SwainInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Rene GeurtsLaboratory of Molecular Biology, Department of Plant Science, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.
Chunting LangLaboratory of Molecular Biology, Department of Plant Science, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.
Klaus F X MayerMIPS/Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Ingolstädter Landstrasse 1, Neuherberg, Germany.
Stephan RössnerMIPS/Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Ingolstädter Landstrasse 1, Neuherberg, Germany.
Steven YatesInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Kathleen J WebbInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Iain S DonnisonInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Giles E D OldroydDepartment of Disease and Stress Biology, John Innes Centre, Norwich NR4 7UH, UK.
Rod A WingArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson AZ 85721, USA.
Mario CaccamoThe Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Wayne PowellInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Michael T AbbertonInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Leif SkøtInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion SY23 3EB, UK.
Institute of Biological, Environmental and Rural Sciences · GBUniversity of Arizona · USAberystwyth University · GBNorwegian University of Life Sciences · NONorwich Research Park · GBAgropolis International · FREarlham Institute · GBJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J004405/1
6 · The paper itself

Abstract

Red clover (Trifolium pratense L.) is a globally significant forage legume in pastoral livestock farming systems. It is an attractive component of grassland farming, because of its high yield and protein content, nutritional value and ability to fix atmospheric nitrogen. Enhancing its role further in sustainable agriculture requires genetic improvement of persistency, disease resistance, and tolerance to grazing. To help address these challenges, we have assembled a chromosome-scale reference genome for red clover. We observed large blocks of conserved synteny with Medicago truncatula and estimated that the two species diverged ~23 million years ago. Among the 40,868 annotated genes, we identified gene clusters involved in biochemical pathways of importance for forage quality and livestock nutrition. Genotyping by sequencing of a synthetic population of 86 genotypes show that the number of markers required for genomics-based breeding approaches is tractable, making red clover a suitable candidate for association studies and genomic selection.

Indexed as

Genome, PlantQuantitative Trait, HeritableComputational BiologyGenes, PlantGenomicsLinkage DisequilibriumMolecular Sequence AnnotationMultigene FamilyPhenotypeSequence Analysis, DNATrifolium

Identifiers

PMID26617401
PMCPMC4663792
OpenAlexW2341605457

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.