Evidence map›Paper›PMID 26616586›Full record

ArticleJournal of molecular biology2016

Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex.

Alexis Huet, Robert L Duda, Roger W Hendrix, Pascale Boulanger, James F Conway

Abstract read
In one paragraph

Article in Journal of molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. TheJournal of virology · 2025
    Article
  3. Viral effectors trigger innate immunity across the tree of life.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  4. A novel Enterococcus faecalis bacteriophage Ef212: biological and genomic features.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
    Article
  5. AeLife · 2024
    Article
  6. Article
  7. AbioRxiv : the preprint server for biology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Convergent evolution of pathogenicity islands in helper cos phage interference.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexis HuetDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA; Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Robert L DudaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Roger W HendrixDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Pascale BoulangerDepartment of Virology, Institute for Integrative Biology of the Cell, UMR 9198 CEA, Centre National de la Recherche Scientifique, Université Paris-Sud, 91191 Gif-sur-Yvette Cedex, France.
James F ConwayDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA. Electronic address: jxc100@pitt.edu.

Funding

ASSEMBLY AND STRUCTURE OF BACTERIOPHAGE LAMBDAR01GM047795 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUDA, ROBERT LOUIS · 1991 to 2017
$7.8M
NIGMS NIH HHS GM47795NIGMS NIH HHS R01 GM047795
6 · The paper itself

Abstract

The 90-nm-diameter capsid of coliphage T5 is organized with T=13 icosahedral geometry and encloses a double-stranded DNA genome that measures 121kbp. Its assembly follows a path similar to that of phage HK97 but yielding a larger structure that includes 775 subunits of the major head protein, 12 subunits of the portal protein and 120 subunits of the decoration protein. As for phage HK97, T5 encodes the scaffold function as an N-terminal extension (∆-domain) to the major head protein that is cleaved by the maturation protease after assembly of the initial prohead I form and prior to DNA packaging and capsid expansion. Although the major head protein alone is sufficient to assemble capsid-like particles, the yield is poor and includes many deformed structures. Here we explore the role of both the portal and the protease in capsid assembly by generating constructs that include the major head protein and a combination of protease (wild type or an inactive mutant) and portal proteins and overexpressing them in Escherichia coli. Our results show that the inactive protease mutant acts to trigger assembly of the major head protein, probably through binding to the ∆-domain, while the portal protein regulates assembly into the correct T=13 geometry. A cryo-electron microscopy reconstruction of prohead I including inactivated protease reveals density projecting from the prohead interior surface toward its center that is compatible with the ∆-domain, as well as additional internal density that we assign as the inactivated protease. These results reveal complexity in T5 beyond that of the HK97 system.

Indexed as

Virus AssemblyCryoelectron MicroscopyDNA Mutational AnalysisEscherichia coliSiphoviridaeViral ProteinsViral Proteinscapsid assemblymaturation proteaseportalscaffoldingtailed bacteriophage

Identifiers

PMID26616586
PMCPMC4738002

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.