Evidence map›Paper›PMID 26616534›Full record

ArticleScientific reports2015

Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway.

Mingyi Yang, Xiaolin Lin, Alexander Rowe, Torbjørn Rognes, Lars Eide, Magnar Bjørås

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 59 citations in OpenAlex.

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  14. Anti-Oxidative and Immune Regulatory Responses of THP-1 and PBMC to Pulsed EMF Are Field-Strength Dependent.International journal of environmental research and public health · 2021
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  19. ZebrafishGenes · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Mingyi YangDepartment of Microbiology, Oslo University Hospital and University of Oslo, Norway.
Xiaolin LinDepartment of Medical Biochemistry, Oslo University Hospital and University of Oslo, Norway.
Alexander RoweDepartment of Medical Biochemistry, Oslo University Hospital and University of Oslo, Norway.
Torbjørn RognesDepartment of Microbiology, Oslo University Hospital and University of Oslo, Norway.
Lars EideDepartment of Medical Biochemistry, Oslo University Hospital and University of Oslo, Norway.
Magnar BjøråsDepartment of Microbiology, Oslo University Hospital and University of Oslo, Norway.
University of Oslo · NOOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The oxidation resistance gene 1 (OXR1) is crucial for protecting against oxidative stress; however, its molecular function is unknown. We employed RNA sequencing to examine the role of human OXR1 for genome wide transcription regulation. In total, in non-treated and hydrogen peroxide exposed HeLa cells, OXR1 depletion resulted in down-regulation of 554 genes and up-regulation of 253 genes. These differentially expressed genes include transcription factors (i.e. HIF1A, SP6, E2F8 and TCF3), antioxidant genes (PRDX4, PTGS1 and CYGB) and numerous genes of the p53 signaling pathway involved in cell-cycle arrest (i.e. cyclin D, CDK6 and RPRM) and apoptosis (i.e. CytC and CASP9). We demonstrated that OXR1 depleted cells undergo cell cycle arrest in G2/M phase during oxidative stress and increase protein expression of the apoptosis initiator protease CASP9. In summary, OXR1 may act as a sensor of cellular oxidative stress to regulate the transcriptional networks required to detoxify reactive oxygen species and modulate cell cycle and apoptosis.

Indexed as

Gene Expression ProfilingGene Expression RegulationSignal TransductionTranscriptomeCaspase 9Cell CycleCell Cycle CheckpointsCluster AnalysisComputational BiologyGene Knockout TechniquesGene OntologyHeLa CellsHigh-Throughput Nucleotide SequencingHumansMitochondrial ProteinsOxidative StressCaspase 9Mitochondrial ProteinsOXR1 protein, humanProteinsRNA, Small InterferingTranscription FactorsTumor Suppressor Protein p53

Identifiers

PMID26616534
PMCPMC4663793
OpenAlexW2181831342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.