Evidence map›Paper›PMID 26616421›Full record

ArticlePharmacogenomics2015

Folate metabolic pathway single nucleotide polymorphisms: a predictive pharmacogenetic marker of methotrexate response in Indian (Asian) patients with rheumatoid arthritis.

Yogita Ghodke-Puranik, Amrutesh S Puranik, Pooja Shintre, Kalpana Joshi, Bhushan Patwardhan, Jatinder Lamba, Timothy B Niewold, Arvind Chopra

Abstract read
In one paragraph

Article in Pharmacogenomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 4 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 4 syntheses or guidelines pooled it, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 4 countries.

Yogita Ghodke-PuranikInterdisciplinary School of Health Sciences, University of Pune, Pune 411007, India.
Amrutesh S PuranikInterdisciplinary School of Health Sciences, University of Pune, Pune 411007, India.
Pooja ShintreDepartment of Biotechnology, Sinhgad College of Engineering, Pune 411041, India.
Kalpana JoshiDepartment of Biotechnology, Sinhgad College of Engineering, Pune 411041, India.
Bhushan PatwardhanInterdisciplinary School of Health Sciences, University of Pune, Pune 411007, India.
Jatinder LambaUniversity of Florida, Gainesville, FL 32610, USA.
Timothy B NiewoldDepartment of Immunology & Division of Rheumatology, Mayo Clinic, Rochester, MN 55901, USA.
Arvind ChopraCentre for Rheumatic Diseases, Pune 411001, India.
Savitribai Phule Pune University · INInstitute for Rheumatic Diseases (Japan) · JPMayo Clinic · USMayo Clinic in Arizona · USSinhgad Dental College and Hospital · INUniversity of Florida · USUniversity of Western Australia · AU

Funding

Pharmacogenomics of Ara-C in AMLR01CA132946 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., POUNDS, STANLEY BARRETT · 2008 to 2025
$5.3M
Interferon Regulatory Factor 5 in Human Lupus PathogenesisR01AR065964 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NIEWOLD, TIMOTHY B · 2015 to 2018
$2.0M
Interferon Alpha as a Tool for Gene Discovery in Human LupusR01AR060861 · NIAMS · UNIVERSITY OF CHICAGO · PI NIEWOLD, TIMOTHY B · 2011 to 2015
$1.8M
The Role of IL-17 Axis in Inflammatory MyositisR01AR057781 · NIAMS · MAYO CLINIC ROCHESTER · PI NIEWOLD, TIMOTHY B, PETERSON, ERIK J · 2010 to 2014
$1.6M
Impact of genetic variation on response to GO therapy in COG-AML clinical trialsR21CA155524 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., WALTER, ROLAND BRUNO · 2012 to 2013
$439k
NCI NIH HHS R01 CA132946NCI NIH HHS R01CA132946NCI NIH HHS R21 CA155524NCI NIH HHS R21CA155524NIAID NIH HHS AI071651NIAID NIH HHS L30 AI071651NIAMS NIH HHS AR057781NIAMS NIH HHS AR060861NIAMS NIH HHS AR065964NIAMS NIH HHS R01 AR057781NIAMS NIH HHS R01 AR060861NIAMS NIH HHS R01 AR065964
6 · The paper itself

Abstract

aimWe evaluated the pharmacogenetic influence of genetic polymorphisms in folate pathway genes in Indian rheumatoid arthritis patients receiving methotrexate (MTX). PATIENTS &

methodsTwelve polymorphisms within nine folate pathway genes were analyzed for association with MTX response in 322 Indian rheumatoid arthritis (RA) patients and MTX pharmacokinetics in 94 RA patients.

resultsPolymorphisms in GGH, SHMT1 and TS were associated with MTX-related adverse events while SNPs in MTHFR and RFC1/SLC19A1 were associated with MTX efficacy. TS5'UTR and SHMT1 polymorphisms were associated with higher plasma levels of MTX.

conclusionPolymorphisms in folate-MTX pathway genes contribute to MTX response and affect MTX concentrations in Indian RA patients. A toxicogenetic index could identify patients who develop adverse events to MTX.

Indexed as

AdultAntirheumatic AgentsArthritis, RheumatoidAsian PeopleCross-Sectional StudiesFemaleFolic AcidGenotypeHumansMaleMetabolic Networks and PathwaysMethotrexateMiddle AgedPolymorphism, Single NucleotideRiskAntirheumatic AgentsFolic AcidMethotrexatefolate metabolismhomocysteineIndiansmethotrexatepharmacogenomicspharmacokinetics

Identifiers

PMID26616421
PMCPMC4976849
OpenAlexW2184889105

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.