Evidence map›Paper›PMID 26616172›Full record

ArticleScientific reports2015

Sucrose metabolism gene families and their biological functions.

Shu-Ye Jiang, Yun-Hua Chi, Ji-Zhou Wang, Jun-Xia Zhou, Yan-Song Cheng, Bao-Lan Zhang, Ali Ma, Jeevanandam Vanitha, Srinivasan Ramachandran

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  5. iTRAQ based proteomic analysis of rice lines having single or stacked blast resistance genes:Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  6. Dynamics of the sucrose metabolism and related gene expression in tomato fruits under water deficit.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  7. Article
  8. Review
  9. New Insights intoInternational journal of molecular sciences · 2022
    Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shu-Ye JiangGenome Structural Biology Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604.
Yun-Hua ChiTLL-IOB Joint R&D Laboratory, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Ji-Zhou WangTLL-IOB Joint R&D Laboratory, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Jun-Xia ZhouTLL-IOB Joint R&D Laboratory, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Yan-Song ChengTLL-IOB Joint R&D Laboratory, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Bao-Lan ZhangTLL-IOB Joint R&D Laboratory, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Ali MaGenome Structural Biology Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604.
Jeevanandam VanithaGenome Structural Biology Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604.
Srinivasan RamachandranGenome Structural Biology Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sucrose, as the main product of photosynthesis, plays crucial roles in plant development. Although studies on general metabolism pathway were well documented, less information is available on the genome-wide identification of these genes, their expansion and evolutionary history as well as their biological functions. We focused on four sucrose metabolism related gene families including sucrose synthase, sucrose phosphate synthase, sucrose phosphate phosphatase and UDP-glucose pyrophosphorylase. These gene families exhibited different expansion and evolutionary history as their host genomes experienced differentiated rates of the whole genome duplication, tandem and segmental duplication, or mobile element mediated gene gain and loss. They were evolutionarily conserved under purifying selection among species and expression divergence played important roles for gene survival after expansion. However, we have detected recent positive selection during intra-species divergence. Overexpression of 15 sorghum genes in Arabidopsis revealed their roles in biomass accumulation, flowering time control, seed germination and response to high salinity and sugar stresses. Our studies uncovered the molecular mechanisms of gene expansion and evolution and also provided new insight into the role of positive selection in intra-species divergence. Overexpression data revealed novel biological functions of these genes in flowering time control and seed germination under normal and stress conditions.

Indexed as

Genes, PlantMultigene FamilyBiomassCarbohydrate MetabolismDNA Transposable ElementsEvolution, MolecularFlowersGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantGenetic VariationGenome, PlantGenome-Wide Association StudyGenomicsGerminationPhenotypeDNA Transposable ElementsSucrose

Identifiers

PMID26616172
PMCPMC4663468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.