Evidence map›Paper›PMID 26614740›Full record

ArticleGenetics2016

Genetic Architectures of Quantitative Variation in RNA Editing Pathways.

Tongjun Gu, Daniel M Gatti, Anuj Srivastava, Elizabeth M Snyder, Narayanan Raghupathy, Petr Simecek, Karen L Svenson, Ivan Dotu, Jeffrey H Chuang, Mark P Keller and 3 more

Abstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Fifteen years of the Diversity Outbred mouse model: a review.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  3. irCLASH reveals RNA substrates recognized by human ADARs.Nature structural & molecular biology · 2020
    Article
  4. Article
  5. Review
  6. Article
  7. WidespreadRNA (New York, N.Y.) · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Tongjun GuThe Jackson Laboratory, Bar Harbor, Maine 04609.
Daniel M GattiThe Jackson Laboratory, Bar Harbor, Maine 04609.
Anuj SrivastavaThe Jackson Laboratory, Bar Harbor, Maine 04609.
Elizabeth M SnyderThe Jackson Laboratory, Bar Harbor, Maine 04609.
Narayanan RaghupathyThe Jackson Laboratory, Bar Harbor, Maine 04609.
Petr SimecekThe Jackson Laboratory, Bar Harbor, Maine 04609.
Karen L SvensonThe Jackson Laboratory, Bar Harbor, Maine 04609.
Ivan DotuResearch Programme on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Dr. Aiguader, 88 Barcelona, Spain The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06030.
Jeffrey H ChuangThe Jackson Laboratory for Genomic Medicine, Farmington, Connecticut 06030.
Mark P KellerDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706-1544.
Alan D AttieDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706-1544.
Robert E BraunThe Jackson Laboratory, Bar Harbor, Maine 04609 Bob.Braun@jax.org Gary.Churchill@jax.org.
Gary A ChurchillThe Jackson Laboratory, Bar Harbor, Maine 04609 Bob.Braun@jax.org Gary.Churchill@jax.org.

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Anna Karolina Palucka · 1985 to 2026
$61.9M
UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI PETKOV, PETKO M · 2006 to 2015
$31.0M
Systems Genetic Analysis of Multi-parent CrossesR01GM070683 · NIGMS · JACKSON LABORATORY · PI BROMAN, KARL W, CHURCHILL, GARY A · 2004 to 2022
$6.8M
Genetic Mapping of Networks Associated with Beta-cell D*R01DK066369 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2004 to 2014
$6.3M
The Genetics of Obesity and DiabetesR01DK058037 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2001 to 2013
$5.7M
The Diversity Outbred Diabetes ProjectR01DK101573 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Alan D Attie · 2014 to 2026
$5.3M
The Collaborative Cross Project on Obesity and DiabetesR24DK091207 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D, BRUNENGRABER, HENRI · 2011 to 2011
$517k
Combinatorial RNA Structural Features That Control RNA-Protein BindingR21HG007554 · NHGRI · JACKSON LABORATORY · PI CHUANG, JEFFREY HSU-MIN · 2014 to 2015
$513k
Male Germ Cell RNA Binding Proteins and Nuclear RNAs in Male FertilityK99HD083521 · NICHD · JACKSON LABORATORY · PI SNYDER, ELIZABETH M, · 2015 to 2016
$263k
NCI NIH HHS CA34196NCI NIH HHS P30 CA034196NHGRI NIH HHS R21 HG007554NHGRI NIH HHS R21-HG007554NICHD NIH HHS K99 HD083521NICHD NIH HHS K99/R00-K99HD083521NIDDK NIH HHS R01 DK058037NIDDK NIH HHS R01-DK058037NIDDK NIH HHS R01 DK066369NIDDK NIH HHS R01-DK066369NIDDK NIH HHS R01 DK101573NIDDK NIH HHS R24 DK091207NIDDK NIH HHS R24-DK091207NIGMS NIH HHS P50 GM076468NIGMS NIH HHS P50-GM076468NIGMS NIH HHS R01 GM070683NIGMS NIH HHS R01-GM070683
6 · The paper itself

Abstract

RNA editing refers to post-transcriptional processes that alter the base sequence of RNA. Recently, hundreds of new RNA editing targets have been reported. However, the mechanisms that determine the specificity and degree of editing are not well understood. We examined quantitative variation of site-specific editing in a genetically diverse multiparent population, Diversity Outbred mice, and mapped polymorphic loci that alter editing ratios globally for C-to-U editing and at specific sites for A-to-I editing. An allelic series in the C-to-U editing enzyme Apobec1 influences the editing efficiency of Apob and 58 additional C-to-U editing targets. We identified 49 A-to-I editing sites with polymorphisms in the edited transcript that alter editing efficiency. In contrast to the shared genetic control of C-to-U editing, most of the variable A-to-I editing sites were determined by local nucleotide polymorphisms in proximity to the editing site in the RNA secondary structure. Our results indicate that RNA editing is a quantitative trait subject to genetic variation and that evolutionary constraints have given rise to distinct genetic architectures in the two canonical types of RNA editing.

Indexed as

Genetic VariationMultifactorial InheritanceQuantitative Trait LociRNA EditingAnimalsAPOBEC-1 DeaminaseChromosome MappingCytidine DeaminaseFemaleGene Expression ProfilingGenomeMaleMiceAPOBEC-1 DeaminaseCytidine DeaminaseApobec1Diversity OutbredgeneticsMPPMultiparent Advanced Generation Inter-Cross (MAGIC)multiparental populationsRNA editingsecondary structure

Identifiers

PMID26614740
PMCPMC4788250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.