Evidence map›Paper›PMID 26613595›Full record

ArticleArthritis research & therapy2015

An HLA-C amino-acid variant in addition to HLA-B*27 confers risk for ankylosing spondylitis in the Korean population.

Kwangwoo Kim, So-Young Bang, Seunghun Lee, Hye-Soon Lee, Seung-Cheol Shim, Young Mo Kang, Chang-Hee Suh, Celi Sun, Swapan K Nath, Sang-Cheol Bae and 1 more

Open access · goldAbstract read
In one paragraph

Article in Arthritis research & therapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. The Genetics of Spondyloarthritis.Journal of personalized medicine · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. HLA-C: An Accomplice in Rheumatic Diseases.ACR open rheumatology · 2019
    Review
  13. Article
  14. Article
  15. Review
  16. Genetics and the Causes of Ankylosing Spondylitis.Rheumatic diseases clinics of North America · 2017
    Review
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Kwangwoo KimDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. atgc@hanyang.ac.kr.
So-Young BangDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. sybang@hanyang.ac.kr.
Seunghun LeeDepartment of Radiology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. radsh@hanyang.ac.kr.
Hye-Soon LeeDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. lhsberon@hanyang.ac.kr.
Seung-Cheol ShimDivision of Rheumatology, Daejeon Rheumatoid & Degenerative Arthritis Center, Chungnam National University Hospital, 282, Munhwa-ro, Jung-gu, Daejeon, 35015, Republic of Korea. shimsc@cnuh.co.kr.
Young Mo KangDivision of Rheumatology, Department of Internal Medicine, Kyungpook National University School of Medicine, 680, Gukchaebosang-ro, Jung-gu, Daegu, 41944, Republic of Korea. ymkang@knu.ac.kr.
Chang-Hee SuhDepartment of Rheumatology, Ajou University School of Medicine, 164, World cup-ro, Yeongtong-gu, Suwon, 16499, Republic of Korea. chsuh@ajou.ac.kr.
Celi SunArthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK, 73104, USA. celi-sun@omrf.org.
Swapan K NathArthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK, 73104, USA. swapan-nath@omrf.org.
Sang-Cheol BaeDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. scbae@hanyang.ac.kr.
Tae-Hwan KimDepartment of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea. thkim@hanyang.ac.kr.
Hanyang University Seoul Hospital · KRAnyang University · KROklahoma Medical Research Foundation · USAjou University · KRChungnam National University Hospital · KRKyungpook National University · KR

Funding

SLE Susceptibility and Clinical Significance at 2q22-24 across Multiple EthnicitiR01AR060366 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2010 to 2019
$3.3M
Health Disparities and Genetic Architecture of Lupus in African AmericansR01MD007909 · NIMHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI NATH, SWAPAN K. · 2014 to 2018
$2.1M
NIAMS NIH HHS R01 AR060366NIAMS NIH HHS R01AR060366NIMHD NIH HHS R01 MD007909NIMHD NIH HHS R01MD007909
6 · The paper itself

Abstract

introductionThe presence of the HLA-B*27 allele is a major risk factor for the development of ankylosing spondylitis (AS), which causes chronic inflammation of the spine and other sites. We investigated residual effects outside HLA-B within the major histocompatibility complex (MHC) region in the Korean population.

methodsUsing the Korean HLA reference panel, we inferred the classic HLA alleles and amino-acid residues of the six HLA genes (HLA-A, -B, -C, -DPB1, -DQB1, and -DRB1) and MHC single-nucleotide polymorphisms in 3820 Korean subjects, including 654 Korean cases of AS and 3166 controls, who were genotyped by using Immunochip. Logistic regression and log-likelihood ratio tests were used in AS association tests for imputed markers.

resultsThe most significant associations were identified at amino-acid positions in the epitope-binding site of HLA-B (P = 1.71 × 10(-481) at position 70, P = 7.20 × 10(-479) at position 97, and P = 2.54 × 10(-484) at positions 114), highlighting the risk effect of the HLA-B*27 allele and the protective effects of other classic alleles. A secondary effect was located at the leucine at amino-acid position 116 in the epitope-binding site of HLA-C (P = 1.69 × 10(-14)), completely tagging the HLA-C*15:02 allele. This residue had a large effect in HLA-B*27-negative patients (odds ratio = 6.6, 95 % confidence interval = 3.8 to 11.4).

conclusionsThe four amino-acid positions of HLA-B and -C account for most of the associations between AS and MHC in the Korean population. This finding updates the list of AS susceptibility loci and provides new insight into AS pathogenesis mediated by MHC class I molecules.

Indexed as

Asian PeopleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHLA-B AntigensHLA-C AntigensHumansOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideRisk FactorsSpondylitis, AnkylosingHLA-B AntigensHLA-C Antigens

Identifiers

PMID26613595
PMCPMC4662802
OpenAlexW2179880966

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.