Evidence map›Paper›PMID 26613412›Full record

ArticleeLife2015

The CUL4-DDB1 ubiquitin ligase complex controls adult and embryonic stem cell differentiation and homeostasis.

Jie Gao, Shannon M Buckley, Luisa Cimmino, Maria Guillamot, Alexandros Strikoudis, Yong Cang, Stephen P Goff, Iannis Aifantis

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Unraveling DNA Repair Processes In Vivo: Insights from Zebrafish Studies.International journal of molecular sciences · 2023
    Review
  7. E3 ubiquitin ligase on the biological properties of hematopoietic stem cell.Journal of molecular medicine (Berlin, Germany) · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Ddb1 Is Essential for the Expansion of CD4Frontiers in immunology · 2021
    Article
  13. Article
  14. Review
  15. Article
  16. Whole Blood Gene Expression Associated With Clinical Biological Age.The journals of gerontology. Series A, Biological sciences and medical sciences · 2019
    Article
  17. The emerging role for Cullin 4 family of E3 ligases in tumorigenesis.Biochimica et biophysica acta. Reviews on cancer · 2019
    Review
  18. Article
  19. Ubiquitylation at the crossroads of development and disease.Nature reviews. Molecular cell biology · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jie GaoDepartment of Pathology, New York University School of Medicine, New York, United States.
Shannon M BuckleyDepartment of Pathology, New York University School of Medicine, New York, United States.
Luisa CimminoDepartment of Pathology, New York University School of Medicine, New York, United States.
Maria GuillamotDepartment of Pathology, New York University School of Medicine, New York, United States.
Alexandros StrikoudisDepartment of Pathology, New York University School of Medicine, New York, United States.
Yong CangSignal Transduction Program, Sanford-Burnham Medical Research Institute, La Jolla, United States.
Stephen P GoffDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University, New York, United States.
Iannis AifantisDepartment of Pathology, New York University School of Medicine, New York, United States.
New York University · USHoward Hughes Medical Institute · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of Nebraska Medical Center · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
The role of the SCF/FBW7 ubiquitin ligase complex in hematopiesis and leukemia.R01CA133379 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS · 2009 to 2018
$3.6M
Regulation of hematopoietic stem cell differentiationR01CA105129 · NCI · UNIVERSITY OF CHICAGO · PI AIFANTIS, IANNIS · 2005 to 2014
$2.8M
Mechanisms of T cell leukemia induction and maintenanceR01CA149655 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS · 2010 to 2015
$2.0M
Training Program in Stem Cell and Cancer BiologyT32CA160002 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEHMANN, RUTH · 2011 to 2015
$1.6M
Regulation of cyclin D3 in B lymphocyte developmentR01GM088847 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2010 to 2013
$1.2M
Modifiers of Notch stability and their role in cancerR21CA141399 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS, HUBBARD, E. JANE ALBERT · 2010 to 2011
$399k
NCI NIH HHS 1T32CA160002-01NCI NIH HHS P30 CA016087NCI NIH HHS R00CA149655NCI NIH HHS R01 CA105129NCI NIH HHS R01CA105129NCI NIH HHS R01 CA133379NCI NIH HHS R01CA133379NCI NIH HHS R01 CA149655NCI NIH HHS R21 CA141399NCI NIH HHS R21CA141399NCI NIH HHS T32 CA160002NIGMS NIH HHS R01 GM088847NIGMS NIH HHS R01GM088847
6 · The paper itself

Abstract

Little is known on post-transcriptional regulation of adult and embryonic stem cell maintenance and differentiation. Here we characterize the role of Ddb1, a component of the CUL4-DDB1 ubiquitin ligase complex. Ddb1 is highly expressed in multipotent hematopoietic progenitors and its deletion leads to abrogation of both adult and fetal hematopoiesis, targeting specifically transiently amplifying progenitor subsets. However, Ddb1 deletion in non-dividing lymphocytes has no discernible phenotypes. Ddb1 silencing activates Trp53 pathway and leads to significant effects on cell cycle progression and rapid apoptosis. The abrogation of hematopoietic progenitor cells can be partially rescued by simultaneous deletion of Trp53. Conversely, depletion of DDB1 in embryonic stem cell (ESC) leads to differentiation albeit negative effects on cell cycle and apoptosis. Mass spectrometry reveals differing protein interactions between DDB1 and distinct DCAFs, the substrate recognizing components of the E3 complex, between cell types. Our studies identify CUL4-DDB1 complex as a novel post-translational regulator of stem and progenitor maintenance and differentiation.

Indexed as

Cell DifferentiationAnimalsCullin ProteinsDNA-Binding ProteinsEmbryonic Stem CellsGene DeletionGene Expression RegulationGene SilencingHomeostasisMiceSignal TransductionTumor Suppressor Protein p53Cul4a protein, mouseCullin ProteinsDdb1 protein, mouseDNA-Binding ProteinsTumor Suppressor Protein p53developmental biologyembryonic stem cellhematopoiesishumanmousestem cellsubiquitin proteasome system

Identifiers

PMID26613412
PMCPMC4721963
OpenAlexW2257117014

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.