Evidence map›Paper›PMID 26612412›Full record

ArticleAnnals of human genetics2016

A Three-Way Interaction among Maternal and Fetal Variants Contributing to Congenital Heart Defects.

Ming Li, Jingyun Li, Changshuai Wei, Qing Lu, Xinyu Tang, Stephen W Erickson, Stewart L MacLeod, Charlotte A Hobbs

Open access · greenAbstract read
In one paragraph

Article in Annals of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Epigenetics and Congenital Heart Diseases.Journal of cardiovascular development and disease · 2022
    Review
  5. A missense mutation inOncotarget · 2017
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Ming LiDepartment of Epidemiology and Biostatistics, Indiana University at Bloomington, Bloomington, IN, USA.
Jingyun LiDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Changshuai WeiDepartment of Epidemiology and Biostatistics, University of North Texas Health Science Center, Fort Worth, TX, USA.
Qing LuDepartment of Epidemiology and Biostatistics, Michigan State University, East Lansing, MI, USA.
Xinyu TangDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Stephen W EricksonDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Stewart L MacLeodDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Charlotte A HobbsDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
University of Arkansas for Medical Sciences · USIndiana University Bloomington · USMichigan State University · USUniversity of North Texas · US

Funding

Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Genomic/Epigenomic Factors and Non-Syndromic Congenital Heart Defect Risk R01HD039054 · NICHD · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI HOBBS, CHARLOTTE A · 2000 to 2016
$13.6M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Centers for Birth Defects Research and Prevention (CBDRPs)U01DD000491 · DD · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI HOBBS, CHARLOTTE A · 2009 to 2013
$4.3M
Gene-Gene/Gene-Environment Interactions Associated with Nicotine DependenceK01DA033346 · NIDA · MICHIGAN STATE UNIVERSITY · PI LU, QING · 2013 to 2017
$833k
Arkansas Center for Clinical Translational ResearchKL2TR000063 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$459k
High-dimensional Statistical Genetic Approach for Family-based Orofacial CleftsR03DE022379 · NIDCR · MICHIGAN STATE UNIVERSITY · PI LU, QING · 2012 to 2013
$441k
NCATS NIH HHS KL2 TR000063NCATS NIH HHS KL2TR000063NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1TR000039NCATS NIH HHS UL1 TR001108NCBDD CDC HHS 5U01DD000491NCBDD CDC HHS U01 DD000491NICHD NIH HHS 5R01HD039054NICHD NIH HHS R01 HD039054NIDA NIH HHS K01 DA033346NIDCR NIH HHS R03 DE022379
6 · The paper itself

Abstract

Congenital heart defects (CHDs) develop through a complex interplay between genetic variants, epigenetic modifications, and maternal environmental exposures. Genetic studies of CHDs have commonly tested single genetic variants for association with CHDs. Less attention has been given to complex gene-by-gene and gene-by-environment interactions. In this study, we applied a recently developed likelihood-ratio Mann-Whitney (LRMW) method to detect joint actions among maternal variants, fetal variants, and maternal environmental exposures, allowing for high-order statistical interactions. All subjects are participants from the National Birth Defect Prevention Study, including 623 mother-offspring pairs with CHD-affected pregnancies and 875 mother-offspring pairs with unaffected pregnancies. Each individual has 872 single nucleotide polymorphisms encoding for critical enzymes in the homocysteine, folate, and trans-sulfuration pathways. By using the LRMW method, three variants (fetal rs625879, maternal rs2169650, and maternal rs8177441) were identified with a joint association to CHD risk (nominal P-value = 1.13e-07). These three variants are located within genes BHMT2, GSTP1, and GPX3, respectively. Further examination indicated that maternal SNP rs2169650 may interact with both fetal SNP rs625879 and maternal SNP rs8177441. Our findings suggest that the risk of CHD may be influenced by both the intragenerational interaction within the maternal genome and the intergenerational interaction between maternal and fetal genomes.

Indexed as

Polymorphism, Single NucleotideAdultBetaine-Homocysteine S-MethyltransferaseDNA Mutational AnalysisFemaleFetusGenome, HumanGenotypeGlutathione PeroxidaseGlutathione S-Transferase piHeart Defects, CongenitalHumansLikelihood FunctionsMaternal ExposureYoung AdultBetaine-Homocysteine S-MethyltransferaseBHMT2 protein, humanGlutathione PeroxidaseGlutathione S-Transferase piGPX3 protein, humanGSTP1 protein, humancongenital heart defectsfetal variantsGene-by-gene interactionhigh-order interactionslikelihood ratiomaternal variantsU-statistics

Identifiers

PMID26612412
PMCPMC4839294
OpenAlexW2173997299

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.