Evidence map›Paper›PMID 26612036›Full record

ArticleScientific reports2015

Conservation and Role of Electrostatics in Thymidylate Synthase.

Divita Garg, Stephane Skouloubris, Julien Briffotaux, Hannu Myllykallio, Rebecca C Wade

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Molecular Mechanism of Thymidylate Synthase Inhibition by NInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Divita GargMolecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany.
Stephane SkouloubrisLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645, INSERM U1182, Université Paris-Saclay, 91128, Palaiseau, France.
Julien BriffotauxLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645, INSERM U1182, Université Paris-Saclay, 91128, Palaiseau, France.
Hannu MyllykallioLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645, INSERM U1182, Université Paris-Saclay, 91128, Palaiseau, France.
Rebecca C WadeMolecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany.
École Polytechnique · FRDKFZ-ZMBH Alliance · DEHelmholtz Zentrum München · DEInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Conservation of function across families of orthologous enzymes is generally accompanied by conservation of their active site electrostatic potentials. To study the electrostatic conservation in the highly conserved essential enzyme, thymidylate synthase (TS), we conducted a systematic species-based comparison of the electrostatic potential in the vicinity of its active site. Whereas the electrostatics of the active site of TS are generally well conserved, the TSs from minimal organisms do not conform to the overall trend. Since the genomes of minimal organisms have a high thymidine content compared to other organisms, the observation of non-conserved electrostatics was surprising. Analysis of the symbiotic relationship between minimal organisms and their hosts, and the genetic completeness of the thymidine synthesis pathway suggested that TS from the minimal organism Wigglesworthia glossinidia (W.g.b.) must be active. Four residues in the vicinity of the active site of Escherichia coli TS were mutated individually and simultaneously to mimic the electrostatics of W.g.b TS. The measured activities of the E. coli TS mutants imply that conservation of electrostatics in the region of the active site is important for the activity of TS, and suggest that the W.g.b. TS has the minimal activity necessary to support replication of its reduced genome.

Indexed as

Binding SitesBuchneraCatalytic DomainCloning, MolecularDeoxyuracil NucleotidesEnzyme AssaysEscherichia coliFolic AcidGene ExpressionHumansKineticsModels, MolecularMutationProtein MultimerizationProtein Structure, SecondaryRecombinant Proteins2'-deoxyuridylic acid5,11-methenyltetrahydrohomofolateDeoxyuracil NucleotidesFolic AcidRecombinant ProteinsThymidylate Synthase

Identifiers

PMID26612036
PMCPMC4661567
OpenAlexW2179317638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.