Evidence map›Paper›PMID 26611440›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2016

Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus.

Svetlana A Romanenko, Natalya A Lemskaya, Vladimir A Trifonov, Natalya A Serdyukova, Patricia C M O'Brien, Nina Sh Bulatova, Feodor N Golenishchev, Malcolm A Ferguson-Smith, Fengtang Yang, Alexander S Graphodatsky

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Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Svetlana A RomanenkoInstitute of Molecular and Cellular Biology, SB RAS, Novosibirsk, 630090, Russia. rosa@mcb.nsc.ru.
Natalya A LemskayaInstitute of Molecular and Cellular Biology, SB RAS, Novosibirsk, 630090, Russia.
Vladimir A TrifonovInstitute of Molecular and Cellular Biology, SB RAS, Novosibirsk, 630090, Russia.
Natalya A SerdyukovaInstitute of Molecular and Cellular Biology, SB RAS, Novosibirsk, 630090, Russia.
Patricia C M O'BrienDepartment of Veterinary Medicine, Cambridge Resource Centre for Comparative Genomics, University of Cambridge, Madingley Road, Cambridge, CB3 OES, UK.
Nina Sh BulatovaA. N. Severtsov Institute of Ecology and Evolution, Moscow, 119071, Russia.
Feodor N GolenishchevZoological Institute, RAS, Saint-Petersburg, 190000, Russia.
Malcolm A Ferguson-SmithDepartment of Veterinary Medicine, Cambridge Resource Centre for Comparative Genomics, University of Cambridge, Madingley Road, Cambridge, CB3 OES, UK.
Fengtang YangWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Alexander S GraphodatskyInstitute of Molecular and Cellular Biology, SB RAS, Novosibirsk, 630090, Russia.
Siberian Branch of the Russian Academy of Sciences · RUUniversity of Cambridge · GBInstitute of Molecular and Cell Biology · RUSevertsov Institute of Ecology and Evolution · RUWellcome Sanger Institute · GBZoological Institute · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The subfamily Arvicolinae consists of a great number of species with highly diversified karyotypes. In spite of the wide use of arvicolines in biological and medicine studies, the data on their karyotype structures are limited. Here, we made a set of painting probes from flow-sorted chromosomes of a male Palearctic collared lemming (Dicrostonyx torquatus, DTO). Together with the sets of painting probes made previously from the field vole (Microtus agrestis, MAG) and golden hamster (Mesocricetus auratus, MAU), we carried out a reciprocal chromosome painting between these three species. The three sets of probes were further hybridized onto the chromosomes of the Eurasian water vole (Arvicola amphibius) and northern red-backed vole (Myodes rutilus). We defined the diploid chromosome number in D. torquatus karyotype as 2n = 45 + Bs and showed that the system of sex chromosomes is X1X2Y1. The probes developed here provide a genomic tool-kit, which will help to investigate the evolutionary biology of the Arvicolinae rodents. Our results show that the syntenic association MAG1/17 is present not only in Arvicolinae but also in some species of Cricetinae; and thus, should not be considered as a cytogenetic signature for Arvicolinae. Although cytogenetic signature markers for the genera have not yet been found, our data provides insight into the likely ancestral karyotype of Arvicolinae. We conclude that the karyotypes of modern voles could have evolved from a common ancestral arvicoline karyotype (AAK) with 2n = 56 mainly by centric fusions and fissions.

Indexed as

AnimalsArvicolinaeBiological EvolutionCell LineChromosome AberrationsChromosome BandingChromosome MappingChromosome PaintingCricetinaeGenetic MarkersKaryotypeMesocricetusPhylogenySex ChromosomesSyntenyGenetic MarkersComparative cytogeneticsKaryotype evolutionLemmingVoles

Identifiers

PMID26611440
OpenAlexW2177477129

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.