Evidence map›Paper›PMID 26610576›Full record

ArticlePathogens (Basel, Switzerland)2015

Full Genomic Characterization of a Saffold Virus Isolated in Peru.

Mariana Leguia, Steev Loyola, Jane Rios, Diana Juarez, Carolina Guevara, Maria Silva, Karla Prieto, Michael Wiley, Matthew R Kasper, Gustavo Palacios and 1 more

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Detection of Zika Virus in Oropharyngeal Swabs from Patients with Acute Febrile Illness.The American journal of tropical medicine and hygiene · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Saffold virus, an emerging human cardiovirus.Reviews in medical virology · 2017
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mariana LeguiaNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. mariana.leguia.fn@mail.mil.
Steev LoyolaNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. steev.loyola@med.navy.mil.
Jane RiosNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. jane.s.rios.fn@mail.mil.
Diana JuarezNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. diana.s.juarez2.fn@mail.mil.
Carolina GuevaraNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. carolina.guevara.fn@mail.mil.
Maria SilvaNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. maria.e.silva19.fn@mail.mil.
Karla PrietoCenter for Genome Sciences, United States Army Medical Research Institute for Infectious Diseases (USAMRIID), Frederick, MD 21702, USA. karla.prieto.ctr@mail.mil.
Michael WileyCenter for Genome Sciences, United States Army Medical Research Institute for Infectious Diseases (USAMRIID), Frederick, MD 21702, USA. michael.r.wiley19.ctr@mail.mil.
Matthew R KasperNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. matthew.r.kasper2.mil@mail.mil.
Gustavo PalaciosCenter for Genome Sciences, United States Army Medical Research Institute for Infectious Diseases (USAMRIID), Frederick, MD 21702, USA. gustavo.f.palacios.ctr@mail.mil.
Daniel G BauschNaval Medical Research Unit No. 6 (NAMRU-6), Callao 2, Peru. bauschd@who.int.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While studying respiratory infections of unknown etiology we detected Saffold virus in an oropharyngeal swab collected from a two-year-old female suffering from diarrhea and respiratory illness. The full viral genome recovered by deep sequencing showed 98% identity to a previously described Saffold strain isolated in Japan. Phylogenetic analysis confirmed the Peruvian Saffold strain belongs to genotype 3 and is most closely related to strains that have circulated in Asia. This is the first documented case report of Saffold virus in Peru and the only complete genomic characterization of a Saffold-3 isolate from the Americas.

Indexed as

Cardiovirusfull genomePeruSaffold virus

Identifiers

PMID26610576
PMCPMC4693166

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.