Evidence map›Paper›PMID 26609994›Full record

ArticleNano letters2016

Electrophoretic Deformation of Individual Transfer RNA Molecules Reveals Their Identity.

Robert Y Henley, Brian Alan Ashcroft, Ian Farrell, Barry S Cooperman, Stuart M Lindsay, Meni Wanunu

Abstract read
In one paragraph

Article in Nano letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
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  11. [Unsupervised deep learning for identifying the OSheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2022
    Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Robert Y HenleyDepartment of Physics, Northeastern University , Boston, Massachusetts 02115, United States.
Brian Alan AshcroftBiodesign Institute, Arizona State University , Tempe, Arizona 85281, United States.
Ian FarrellAnima Cell Metrology, Inc. , Bernardsville, New Jersey 07924, United States.
Barry S CoopermanDepartment of Chemistry, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
Stuart M LindsayDepartment of Physics, Arizona State University , Tempe, Arizona 85281, United States.
Meni WanunuDepartment of Physics, Northeastern University , Boston, Massachusetts 02115, United States.

Funding

Instrument to Optimize DNA Sequencing by Recognition TunnelingR01HG006323 · NHGRI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LINDSAY, STUART · 2011 to 2015
$5.0M
Single Molecule Dynamics of mRNA TranslationR01GM080376 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI COOPERMAN, BARRY S., GOLDMAN, YALE E · 2008 to 2016
$2.5M
Picogram-level DNA sequencing using Nanopores and Zero-Mode WaveguidesR21HG006873 · NHGRI · NORTHEASTERN UNIVERSITY · PI KORLACH, JONAS, WANUNU, MENI · 2012 to 2014
$812k
NHGRI NIH HHS HG 006323NHGRI NIH HHS HG006873NHGRI NIH HHS R01 HG006323NHGRI NIH HHS R21 HG006873NIGMS NIH HHS GM080376NIGMS NIH HHS R01 GM080376
6 · The paper itself

Abstract

It has been hypothesized that the ribosome gains additional fidelity during protein translation by probing structural differences in tRNA species. We measure the translocation kinetics of different tRNA species through ∼3 nm diameter synthetic nanopores. Each tRNA species varies in the time scale with which it is deformed from equilibrium, as in the translocation step of protein translation. Using machine-learning algorithms, we can differentiate among five tRNA species, analyze the ratios of tRNA binary mixtures, and distinguish tRNA isoacceptors.

Indexed as

NanoporesProtein BiosynthesisBinding SitesElectrophoresisKineticsMachine LearningRibosomesRNA, TransferRNA, TransfernanoporesRNAsingle moleculeSVMtRNA

Identifiers

PMID26609994
PMCPMC4890568

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.