Evidence map›Paper›PMID 26608341›Full record

ArticleGenome medicine2015

Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain.

Bernardo Cortina-Ceballos, Elizabeth Ernestina Godoy-Lozano, Juan Téllez-Sosa, Marbella Ovilla-Muñoz, Hugo Sámano-Sánchez, Andrés Aguilar-Salgado, Rosa Elena Gómez-Barreto, Humberto Valdovinos-Torres, Irma López-Martínez, Rodrigo Aparicio-Antonio and 2 more

Abstract read
In one paragraph

Article in Genome medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  11. Original Antigenic Sin: How Original? How Sinful?Cold Spring Harbor perspectives in medicine · 2021
    Review
  12. Article
  13. Lower Somatic Mutation Levels in theEvidence-based complementary and alternative medicine : eCAM · 2021
    Article
  14. Article
  15. Host immune response-inspired development of the influenza vaccine.Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology · 2020
    Review
  16. Article
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  20. The Pipeline Repertoire for Ig-Seq Analysis.Frontiers in immunology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Bernardo Cortina-CeballosCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Elizabeth Ernestina Godoy-LozanoCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Juan Téllez-SosaCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Marbella Ovilla-MuñozCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Hugo Sámano-SánchezCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Andrés Aguilar-SalgadoCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Rosa Elena Gómez-BarretoCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Humberto Valdovinos-TorresCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Irma López-MartínezDepartamento de Virología, Instituto de Diagnóstico y Referencia Epidemiológicos, Francisco de P. Miranda 177. Col. Unidad Lomas de Plateros. Álvaro Obregón, Distrito Federal CP, 01480, México, D. F., México.
Rodrigo Aparicio-AntonioDepartamento de Virología, Instituto de Diagnóstico y Referencia Epidemiológicos, Francisco de P. Miranda 177. Col. Unidad Lomas de Plateros. Álvaro Obregón, Distrito Federal CP, 01480, México, D. F., México.
Mario H RodríguezCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México.
Jesús Martínez-BarnetcheCentro de Investigación Sobre Enfermedades Infecciosas-Instituto Nacional de Salud Pública, Av. Universidad 655. Col. Santa María Ahuacatitlán C.P., 62100, Cuernavaca, Morelos, México. jmbarnet@insp.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDespite the potential to produce antibodies that can neutralize different virus (heterotypic neutralization), there is no knowledge of why vaccination against influenza induces protection predominantly against the utilized viral strains (homotypic response). Identification of structural patterns of the B cell repertoire associated to heterotypic neutralization may contribute to identify relevant epitopes for a universal vaccine against influenza.

methodsBlood samples were collected from volunteers immunized with 2008/2009 trivalent inactivated vaccine (TIV), pandemic H1N1 (pdmH1N1) monovalent inactivated vaccine (MIV) and the 2014/2015 TIV. Neutralization was assessed by hemagglutination and microneutralization test. IgG V(H) amplicons derived from peripheral blood RNA from pre-immune and 7 days post vaccination were subjected to 454-Roche sequencing. Full reconstruction of the sampled repertoires was done with ImmunediveRsity.

resultsThe TIV induced a predominantly homotypic neutralizing serologic response, while the 09 MIV induced a heterotypic neutralizing seroconversion in 17% of the individuals. Both the 08/09 and the 14/15 TIV were associated with a reduction in clonotypic diversity, whereas 09 MIV was the opposite. Moreover, TIV and MIV induced distinctive patterns of IGHV segment use that are consistent with B cell selection by conserved antigenic determinants shared by the pre-pandemic and the pandemic strains. However, low somatic hypermutation rates in IgG after 09 MIV immunization, but not after 08/09 and 14/15 TIV immunization were observed. Furthermore, no evidence of the original antigenic sin was found in the same individuals after vaccination with the three vaccines.

conclusionsImmunization with a new influenza virus strain (2009 pdmH1N1) induced unique effects in the peripheral B cell repertoire clonal structure, a stereotyped response involving distinctive IGHV segment use and low somatic hypermutation levels. These parameters were contrastingly different to those observed in response to pre-pandemic and post-pandemic vaccination, and may be the result of clonal selection of common antigenic determinants, as well as germinal center-independent responses that wane as the pandemic strain becomes seasonal. Our findings may contribute in the understanding of the structural and cellular basis required to develop a universal influenza vaccine.

Indexed as

AdultAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralB-LymphocytesEpitopes, B-LymphocyteHumansImmunoglobulin Heavy ChainsInfluenza A Virus, H1N1 SubtypeInfluenza, HumanInfluenza VaccinesLongitudinal StudiesRNASequence Analysis, DNASomatic Hypermutation, ImmunoglobulinVaccines, InactivatedAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralEpitopes, B-LymphocyteImmunoglobulin Heavy ChainsInfluenza VaccinesRNAVaccines, Inactivated

Identifiers

PMID26608341
PMCPMC4658769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.