Evidence map›Paper›PMID 26608064›Full record

ArticleArchives of virology2016

Reorganization and expansion of the nidoviral family Arteriviridae.

Jens H Kuhn, Michael Lauck, Adam L Bailey, Alexey M Shchetinin, Tatyana V Vishnevskaya, Yīmíng Bào, Terry Fei Fan Ng, Matthew LeBreton, Bradley S Schneider, Amethyst Gillis and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Archives of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 222 papers.

0numbers the graph read from it
0cells of the map it votes in
222citing papers in PubMed
24.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

222 citing papers in PubMed, 346 citations in OpenAlex.

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162 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 12 institutions in 4 countries.

Jens H KuhnIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA. kuhnjens@mail.nih.gov.ORCID http://orcid.org/0000-0002-7800-6045
Michael LauckWisconsin National Primate Research Center, Madison, WI, 53715, USA.ORCID http://orcid.org/0000-0003-2813-3705
Adam L BaileyWisconsin National Primate Research Center, Madison, WI, 53715, USA.ORCID http://orcid.org/0000-0002-6560-9680
Alexey M ShchetininD.I. Ivanovsky Institute of Virology, Federal Research Center for Epidemiology and Microbiology Named After the Honorary Academician N. F. Gamaleya, Ministry of Health of the Russian Federation, Moscow, Russia.ORCID http://orcid.org/0000-0003-1842-3899
Tatyana V VishnevskayaD.I. Ivanovsky Institute of Virology, Federal Research Center for Epidemiology and Microbiology Named After the Honorary Academician N. F. Gamaleya, Ministry of Health of the Russian Federation, Moscow, Russia.ORCID http://orcid.org/0000-0002-6963-8681
Yīmíng BàoInformation Engineering Branch, National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA.
Terry Fei Fan NgBlood Systems Research Institute, San Francisco, CA, USA.
Matthew LeBretonMosaic, Yaoundé, Cameroon.
Bradley S SchneiderMetabiota, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7642-0018
Amethyst GillisMetabiota, San Francisco, CA, USA.
Ubald TamoufeGlobal Viral Cameroon, Yaoundé, Cameroon.
Joseph Le Doux DiffoGlobal Viral Cameroon, Yaoundé, Cameroon.
Jean Michel TakuoGlobal Viral Cameroon, Yaoundé, Cameroon.
Nikola O KondovBlood Systems Research Institute, San Francisco, CA, USA.
Lark L CoffeyCenter for Vectorborne Diseases, Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, 95616, USA.
Nathan D WolfeMetabiota, San Francisco, CA, USA.
Eric DelwartBlood Systems Research Institute, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-6296-4484
Anna N ClawsonIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.
Elena PostnikovaIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-0275-2148
Laura BollingerIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-6676-8894
Matthew G LackemeyerIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-2174-9630
Sheli R RadoshitzkyUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA.ORCID http://orcid.org/0000-0001-8976-8056
Gustavo PalaciosUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD, USA.ORCID http://orcid.org/0000-0001-5062-1938
Jiro WadaIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0001-9846-0846
Zinaida V ShevtsovaScientific-Research Institute of Experimental Pathology and Therapy, Sukhumi, Autonomous Republic of Abkhazia, Georgia.
Peter B JahrlingIntegrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-9775-3724
Boris A LapinScientific-Research Institute of Medical Primatology, Russian Academy of Medical Sciences, Sochi, Russia.
Petr G DeriabinD.I. Ivanovsky Institute of Virology, Federal Research Center for Epidemiology and Microbiology Named After the Honorary Academician N. F. Gamaleya, Ministry of Health of the Russian Federation, Moscow, Russia.ORCID http://orcid.org/0000-0002-8522-9554
Magdalena DunowskaInstitute of Veterinary, Animal and Biomedical Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0003-3874-0154
Sergey V AlkhovskyD.I. Ivanovsky Institute of Virology, Federal Research Center for Epidemiology and Microbiology Named After the Honorary Academician N. F. Gamaleya, Ministry of Health of the Russian Federation, Moscow, Russia.ORCID http://orcid.org/0000-0001-6913-5841
Jeffrey RogersHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Thomas C FriedrichDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53706, USA.
David H O'ConnorWisconsin National Primate Research Center, Madison, WI, 53715, USA.ORCID http://orcid.org/0000-0003-2139-470X
Tony L GoldbergDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53706, USA. tgoldberg@vetmed.wisc.edu.ORCID http://orcid.org/0000-0003-3962-4913
National Institutes of Health · USMetabiota (United States) · USMinistry of Health of the Russian Federation · RUBlood Systems Research Institute · USUnited States Army Medical Research Institute of Infectious Diseases · USUniversity of Wisconsin–Madison · USBaylor College of Medicine · USFederal State Budgetary Scientific Institution Research Institute of Medical Primatology · RUMassey University · NZSokhumi State University · GEUniversity of California, Davis · USUniversity of Wisconsin System · US

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Adoptive transfer of immunity elicited by attenuated HIV vaccinesR01AI077376 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI O'CONNOR, DAVID H. · 2008 to 2015
$5.4M
Graduate Training In Cellular And Molecular Pathogenesis Of Human DiseasesT32GM081061 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FABRY, ZSUZSANNA · 2010 to 2019
$1.8M
The Impact and Society Ecology of Bacterial Zoonoses in Northern Tanzania: UnderR01TW009237 · FIC · DUKE UNIVERSITY · PI CRUMP, JOHN ANDREW · 2011 to 2014
$1.7M
FIC NIH HHS R01 TW009237FIC NIH HHS TW009237Intramural NIH HHS Z99 AI999999NIAID NIH HHS HHSN272200700016INIAID NIH HHS R01 AI077376NIGMS NIH HHS T32 GM008692NIGMS NIH HHS T32 GM081061NIH HHS P51 OD011106NIH HHS P51OD011106
6 · The paper itself

Abstract

The family Arteriviridae presently includes a single genus Arterivirus. This genus includes four species as the taxonomic homes for equine arteritis virus (EAV), lactate dehydrogenase-elevating virus (LDV), porcine respiratory and reproductive syndrome virus (PRRSV), and simian hemorrhagic fever virus (SHFV), respectively. A revision of this classification is urgently needed to accommodate the recent description of eleven highly divergent simian arteriviruses in diverse African nonhuman primates, one novel arterivirus in an African forest giant pouched rat, and a novel arterivirus in common brushtails in New Zealand. In addition, the current arterivirus nomenclature is not in accordance with the most recent version of the International Code of Virus Classification and Nomenclature. Here we outline an updated, amended, and improved arterivirus taxonomy based on current data. Taxon-specific sequence cut-offs are established relying on a newly established open reading frame 1b phylogeny and pairwise sequence comparison (PASC) of coding-complete arterivirus genomes. As a result, the current genus Arterivirus is replaced by five genera: Equartevirus (for EAV), Rodartevirus (LDV + PRRSV), Simartevirus (SHFV + simian arteriviruses), Nesartevirus (for the arterivirus from forest giant pouched rats), and Dipartevirus (common brushtail arterivirus). The current species Porcine reproductive and respiratory syndrome virus is divided into two species to accommodate the clear divergence of the European and American "types" of PRRSV, both of which now receive virus status. The current species Simian hemorrhagic fever virus is divided into nine species to accommodate the twelve known simian arteriviruses. Non-Latinized binomial species names are introduced to replace all current species names to clearly differentiate them from virus names, which remain largely unchanged.

Indexed as

ArteriviridaeCluster AnalysisGenome, ViralOpen Reading FramesPhylogenyRNA, ViralRNA Virus InfectionsSequence HomologyTerminology as TopicRNA, Viral

Identifiers

PMID26608064
PMCPMC5573231
OpenAlexW2174353003

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.