Evidence map›Paper›PMID 26607994›Full record

ArticleNew biotechnology2016

Platform for high-throughput antibody selection using synthetically-designed antibody libraries.

Melissa Batonick, Erika G Holland, Valeria Busygina, Dawn Alderman, Brian K Kay, Michael P Weiner, Margaret M Kiss

Abstract read
In one paragraph

Article in New biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Epivolve: A Protocol for Site-Directed Antibodies.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melissa BatonickAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States. Electronic address: mbatonick@axiomxinc.com.
Erika G HollandAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States.
Valeria BusyginaAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States.
Dawn AldermanAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States.
Brian K KayUniversity of Illinois at Chicago, 845 West Taylor Street Chicago, IL 60607, United States.
Michael P WeinerAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States.
Margaret M KissAxioMx, Inc., 688 East Main Street, Branford, CT 06405, United States.

Funding

A novel pre-defined CDR library for selection of affinity reagentsR44GM105080 · NIGMS · AXIOMX, INC. · PI WEINER, MICHAEL P · 2015 to 2016
$1.3M
A novel pre-defined CDR library for selection of affinity reagentsR43GM105080 · NIGMS · AXIOMX, INC. · PI WEINER, MICHAEL P · 2013 to 2013
$335k
System for Multiplex Protein:Protein Interaction Studies Modeled with AntibodiesR43GM112385 · NIGMS · AXIOMX, INC. · PI WEINER, MICHAEL P · 2014 to 2014
$223k
NIGMS NIH HHS R43 GM105080NIGMS NIH HHS R43 GM112385NIGMS NIH HHS R44 GM105080
6 · The paper itself

Abstract

Synthetic humanized antibody libraries are frequently generated by random incorporation of changes at multiple positions in the antibody hypervariable regions. Although these libraries have very large theoretical diversities (>10(20)), the practical diversity that can be achieved by transformation of Escherichia coli is limited to about 10(10). To constrain the practical diversity to sequences that more closely mimic the diversity of natural human antibodies, we generated a scFv phage library using entirely pre-defined complementarity determining regions (CDR). We have used this library to select for novel antibodies against four human protein targets and demonstrate that identification of enriched sequences at each of the six CDRs in early selection rounds can be used to reconstruct a consensus antibody with selectivity for the target.

Indexed as

Peptide LibraryAmino Acid SequenceAntibody DiversityBiotechnologyComplementarity Determining RegionsEscherichia coliHigh-Throughput Screening AssaysHumansSingle-Chain AntibodiesComplementarity Determining RegionsPeptide LibrarySingle-Chain Antibodies

Identifiers

PMID26607994
PMCPMC4879119

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.