Evidence map›Paper›PMID 26607952›Full record

ArticleStem cell reports2015

Enhancer Analysis Unveils Genetic Interactions between TLX and SOX2 in Neural Stem Cells and In Vivo Reprogramming.

Mohammed M Islam, Derek K Smith, Wenze Niu, Sanhua Fang, Nida Iqbal, Guoqiang Sun, Yanhong Shi, Chun-Li Zhang

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. A single factor elicits multilineage reprogramming of astrocytes in the adult mouse striatum.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Reply to In vivo confusion over in vivo conversion.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Frontiers in aging neuroscience · 2021
    Review
  12. Regeneration ThroughFrontiers in cellular neuroscience · 2020
    Review
  13. Article
  14. NT3Stem cell research & therapy · 2019
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Nuclear receptors in neural stem/progenitor cell homeostasis.Cellular and molecular life sciences : CMLS · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Mohammed M IslamDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA.
Derek K SmithDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA.
Wenze NiuDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA.
Sanhua FangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA.
Nida IqbalDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA.
Guoqiang SunDepartment of Neurosciences, Cancer Center, Beckman Research Institute of City of Hope, 1500 E. Duarte Road, Duarte, CA 91010, USA.
Yanhong ShiDepartment of Neurosciences, Cancer Center, Beckman Research Institute of City of Hope, 1500 E. Duarte Road, Duarte, CA 91010, USA.
Chun-Li ZhangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA. Electronic address: chun-li.zhang@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USBeckman Research InstituteCity of Hope · US

Funding

Neurogenesis de novo in the adult central nervous systemDP2OD006484 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2009 to 2009
$2.4M
In Vivo Reprogramming of Glial Fate for Spinal Cord RepairR01NS088095 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2014 to 2018
$1.7M
Transcriptional Control of Adult Neural Stem CellsR01NS070981 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2011 to 2015
$1.7M
Reprogramming the Human Glioma GenomeR21NS093502 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2015 to 2016
$445k
NIH HHS DP2 OD006484NIH HHS DP2OD006484NINDS NIH HHS R01 NS070981NINDS NIH HHS R01NS070981NINDS NIH HHS R01 NS088095NINDS NIH HHS R01NS088095NINDS NIH HHS R21 NS093502NINDS NIH HHS R21NS093502
6 · The paper itself

Abstract

The orphan nuclear receptor TLX is a master regulator of postnatal neural stem cell (NSC) self-renewal and neurogenesis; however, it remains unclear how TLX expression is precisely regulated in these tissue-specific stem cells. Here, we show that a highly conserved cis-element within the Tlx locus functions to drive gene expression in NSCs. We demonstrate that the transcription factors SOX2 and MYT1 specifically interact with this genomic element to directly regulate Tlx enhancer activity in vivo. Knockdown experiments further reveal that SOX2 dominantly controls endogenous expression of TLX, whereas MYT1 only plays a modulatory role. Importantly, TLX is essential for SOX2-mediated in vivo reprogramming of astrocytes and itself is also sufficient to induce neurogenesis in the adult striatum. Together, these findings unveil functional genetic interactions among transcription factors that are critical to NSCs and in vivo cell reprogramming.

Indexed as

Cellular ReprogrammingEnhancer Elements, GeneticAnimalsAstrocytesCorpus StriatumDNA-Binding ProteinsMiceMice, Inbred C57BLMice, Inbred ICRNeural Stem CellsNeurogenesisProtein BindingReceptors, Cytoplasmic and NuclearSOXB1 Transcription FactorsTranscription FactorsDNA-Binding ProteinsMyt1 protein, mouseNr2e1 protein, mouseReceptors, Cytoplasmic and NuclearSox2 protein, mouseSOXB1 Transcription FactorsTranscription Factors

Identifiers

PMID26607952
PMCPMC4649261
OpenAlexW1753801534

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.