Evidence map›Paper›PMID 26607792›Full record

ArticleCell2015

Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos.

Adriana Gonzalez-Sandoval, Benjamin D Towbin, Veronique Kalck, Daphne S Cabianca, Dimos Gaidatzis, Michael H Hauer, Liqing Geng, Li Wang, Teddy Yang, Xinghao Wang and 2 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 229 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Adriana Gonzalez-SandovalFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland; Faculty of Natural Sciences, University of Basel, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland.
Benjamin D TowbinFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
Veronique KalckFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
Daphne S CabiancaFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
Dimos GaidatzisFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland; Swiss Institute of Bioinformatics, CH-4058 Basel, Switzerland.
Michael H HauerFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland; Faculty of Natural Sciences, University of Basel, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland.
Liqing GengChina Novartis Institute of Biomedical Research Co, Ltd. Bldg 3, Lane 3728 Jinke Road, Pudong New Area, Shanghai 201203, China.
Li WangChina Novartis Institute of Biomedical Research Co, Ltd. Bldg 3, Lane 3728 Jinke Road, Pudong New Area, Shanghai 201203, China.
Teddy YangChina Novartis Institute of Biomedical Research Co, Ltd. Bldg 3, Lane 3728 Jinke Road, Pudong New Area, Shanghai 201203, China.
Xinghao WangChina Novartis Institute of Biomedical Research Co, Ltd. Bldg 3, Lane 3728 Jinke Road, Pudong New Area, Shanghai 201203, China.
Kehao ZhaoChina Novartis Institute of Biomedical Research Co, Ltd. Bldg 3, Lane 3728 Jinke Road, Pudong New Area, Shanghai 201203, China.
Susan M GasserFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland; Faculty of Natural Sciences, University of Basel, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland. Electronic address: susan.gasser@fmi.ch.
Novartis (China) · CNFriedrich Miescher Institute · CHUniversity of Basel · CHSIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interphase chromatin is organized in distinct nuclear sub-compartments, reflecting its degree of compaction and transcriptional status. In Caenorhabditis elegans embryos, H3K9 methylation is necessary to silence and to anchor repeat-rich heterochromatin at the nuclear periphery. In a screen for perinuclear anchors of heterochromatin, we identified a previously uncharacterized C. elegans chromodomain protein, CEC-4. CEC-4 binds preferentially mono-, di-, or tri-methylated H3K9 and localizes at the nuclear envelope independently of H3K9 methylation and nuclear lamin. CEC-4 is necessary for endogenous heterochromatin anchoring, but not for transcriptional repression, in contrast to other known H3K9 methyl-binders in worms, which mediate gene repression but not perinuclear anchoring. When we ectopically induce a muscle differentiation program in embryos, cec-4 mutants fail to commit fully to muscle cell fate. This suggests that perinuclear sequestration of chromatin during development helps restrict cell differentiation programs by stabilizing commitment to a specific cell fate. PAPERCLIP.

Indexed as

HeterochromatinHistone CodeAmino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCell NucleusChromosomal Proteins, Non-HistoneEmbryo, NonmammalianMolecular Sequence DataSequence AlignmentCaenorhabditis elegans ProteinsCEC-4 protein, C elegansChromosomal Proteins, Non-HistoneHeterochromatin

Identifiers

PMID26607792
OpenAlexW2174420796

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.