Evidence map›Paper›PMID 26607593›Full record

ArticleApplied and environmental microbiology2016

Unprecedented Melioidosis Cases in Northern Australia Caused by an Asian Burkholderia pseudomallei Strain Identified by Using Large-Scale Comparative Genomics.

Erin P Price, Derek S Sarovich, Emma J Smith, Barbara MacHunter, Glenda Harrington, Vanessa Theobald, Carina M Hall, Heidie M Hornstra, Evan McRobb, Yuwana Podin and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

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  16. An Evolutionary Arms Race BetweenFrontiers in microbiology · 2020
    Review
  17. Molecular Characteristics ofFrontiers in microbiology · 2020
    Article
  18. Article
  19. Article
  20. Endemic Melioidosis in Southern China: Past and Present.Tropical medicine and infectious disease · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Erin P PriceGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia erin.price@menzies.edu.au.ORCID 0000-0002-1079-4882
Derek S SarovichGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.ORCID 0000-0002-6944-3980
Emma J SmithGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia Department of Infectious Diseases and Northern Territory Medical Program, Royal Darwin Hospital, Darwin, Northern Territory, Australia.
Barbara MacHunterGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Glenda HarringtonGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Vanessa TheobaldGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Carina M HallCenter for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA.
Heidie M HornstraCenter for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA.
Evan McRobbGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Yuwana PodinGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Mark MayoGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Jason W SahlCenter for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA.
David M WagnerCenter for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA.
Paul KeimCenter for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA.
Mirjam KaestliGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia.
Bart J CurrieGlobal and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia Department of Infectious Diseases and Northern Territory Medical Program, Royal Darwin Hospital, Darwin, Northern Territory, Australia.
Menzies School of Health Research · AUNorthern Arizona University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Melioidosis is a disease of humans and animals that is caused by the saprophytic bacterium Burkholderia pseudomallei. Once thought to be confined to certain locations, the known presence of B. pseudomallei is expanding as more regions of endemicity are uncovered. There is no vaccine for melioidosis, and even with antibiotic administration, the mortality rate is as high as 40% in some regions that are endemic for the infection. Despite high levels of recombination, phylogenetic reconstruction of B. pseudomallei populations using whole-genome sequencing (WGS) has revealed surprisingly robust biogeographic separation between isolates from Australia and Asia. To date, there have been no confirmed autochthonous melioidosis cases in Australia caused by an Asian isolate; likewise, no autochthonous cases in Asia have been identified as Australian in origin. Here, we used comparative genomic analysis of 455 B. pseudomallei genomes to confirm the unprecedented presence of an Asian clone, sequence type 562 (ST-562), in Darwin, northern Australia. First observed in Darwin in 2005, the incidence of melioidosis cases attributable to ST-562 infection has steadily risen, and it is now a common strain in Darwin. Intriguingly, the Australian ST-562 appears to be geographically restricted to a single locale and is genetically less diverse than other common STs from this region, indicating a recent introduction of this clone into northern Australia. Detailed genomic and epidemiological investigations of new clinical and environmental B. pseudomallei isolates in the Darwin region and ST-562 isolates from Asia will be critical for understanding the origin, distribution, and dissemination of this emerging clone in northern Australia.

Indexed as

Genome, BacterialAnimalsAsiaAustraliaBurkholderia pseudomalleiDNA, BacterialGenetic VariationGenomicsGenotypeHumansMelioidosisPhylogenyPolymorphism, Single NucleotideSequence Analysis, DNADNA, Bacterial

Identifiers

PMID26607593
PMCPMC4725268
OpenAlexW2266669381

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.